Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   H4K32_RS10920 Genome accession   NZ_CP059855
Coordinates   2107873..2109258 (+) Length   461 a.a.
NCBI ID   WP_063174504.1    Uniprot ID   -
Organism   Bacillus velezensis strain Pm9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2102873..2114258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4K32_RS10900 - 2104020..2104667 (-) 648 WP_003151384.1 YigZ family protein -
  H4K32_RS10905 degS 2104890..2106053 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  H4K32_RS10910 degU 2106130..2106819 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H4K32_RS10915 - 2106917..2107765 (+) 849 WP_014305929.1 DegV family protein -
  H4K32_RS10920 comFA 2107873..2109258 (+) 1386 WP_063174504.1 DEAD/DEAH box helicase Machinery gene
  H4K32_RS10925 - 2109316..2109600 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  H4K32_RS10930 comFC 2109606..2110295 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  H4K32_RS10935 - 2110369..2110788 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  H4K32_RS10940 flgM 2110858..2111124 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  H4K32_RS10945 - 2111139..2111621 (+) 483 WP_003151394.1 flagellar protein FlgN -
  H4K32_RS10950 flgK 2111637..2113154 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  H4K32_RS10955 flgL 2113166..2114083 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52457.99 Da        Isoelectric Point: 10.2294

>NTDB_id=472296 H4K32_RS10920 WP_063174504.1 2107873..2109258(+) (comFA) [Bacillus velezensis strain Pm9]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEHITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKGRQELLVWAVCGSGKTEMLFPGIEY
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=472296 H4K32_RS10920 WP_063174504.1 2107873..2109258(+) (comFA) [Bacillus velezensis strain Pm9]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAGCATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGGGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTAT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629