Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   H4K32_RS10910 Genome accession   NZ_CP059855
Coordinates   2106130..2106819 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain Pm9     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2101130..2111819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4K32_RS10890 - 2101635..2102711 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  H4K32_RS10895 - 2102801..2104015 (-) 1215 WP_014305930.1 LCP family protein -
  H4K32_RS10900 - 2104020..2104667 (-) 648 WP_003151384.1 YigZ family protein -
  H4K32_RS10905 degS 2104890..2106053 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  H4K32_RS10910 degU 2106130..2106819 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  H4K32_RS10915 - 2106917..2107765 (+) 849 WP_014305929.1 DegV family protein -
  H4K32_RS10920 comFA 2107873..2109258 (+) 1386 WP_063174504.1 DEAD/DEAH box helicase Machinery gene
  H4K32_RS10925 - 2109316..2109600 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  H4K32_RS10930 comFC 2109606..2110295 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  H4K32_RS10935 - 2110369..2110788 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  H4K32_RS10940 flgM 2110858..2111124 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  H4K32_RS10945 - 2111139..2111621 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=472295 H4K32_RS10910 WP_003219701.1 2106130..2106819(+) (degU) [Bacillus velezensis strain Pm9]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=472295 H4K32_RS10910 WP_003219701.1 2106130..2106819(+) (degU) [Bacillus velezensis strain Pm9]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1