Detailed information NTG0472126

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H3302_RS13185
• Genome accession: NZ_CP059831
• Coordinates: 2915426..2916322 (+)
• Length: 298 a.a.
• NCBI ID: WP_180311093.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. MT33b
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2910426..2921322

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H3302_RS13165 (H3302_13165)	nadC	2910866..2911714 (+)	849	WP_074988951.1	carboxylating nicotinate-nucleotide diphosphorylase	-
H3302_RS13170 (H3302_13170)	-	2912212..2912655 (+)	444	WP_180311090.1	pilin	-
H3302_RS13175 (H3302_13175)	-	2912702..2913997 (+)	1296	WP_180311091.1	O-antigen ligase family protein	-
H3302_RS13180 (H3302_13180)	pilC	2914017..2915246 (+)	1230	WP_182395472.1	type II secretion system F family protein	Machinery gene
H3302_RS13185 (H3302_13185)	pilD	2915426..2916322 (+)	897	WP_180311093.1	A24 family peptidase	Machinery gene
H3302_RS13190 (H3302_13190)	coaE	2916325..2916933 (+)	609	WP_180311094.1	dephospho-CoA kinase	-
H3302_RS13195 (H3302_13195)	pilB	2917096..2918772 (+)	1677	WP_118844625.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H3302_RS13200 (H3302_13200)	yacG	2918840..2919073 (+)	234	WP_036965896.1	DNA gyrase inhibitor YacG	-
H3302_RS13205 (H3302_13205)	-	2919135..2919665 (-)	531	WP_051501715.1	Spy/CpxP family protein refolding chaperone	-
H3302_RS13210 (H3302_13210)	-	2919837..2920526 (+)	690	WP_036965892.1	response regulator	-

Sequence

Protein

• Length: 298 a.a.
• Molecular weight: 33039.43 Da
• Isoelectric Point: 5.1967

>NTDB_id=472126 H3302_RS13185 WP_180311093.1 2915426..2916322(+) (pilD) [Pseudoalteromonas sp. MT33b]
MQNFFLDIATVMQSQQWFYLLTVGLVSLCIGSFLNVVIYRLPLMMKREWQSECRLLLADEQTINHTEEPTPFNLVTPNST
CPQCKAPIKIWQNIPVISWLILKGRCASCEAPISVRYPIVEMLTASLSIAVAVVFGASELALLYIVITWVLIALTFIDID
HMLLPDQLTLPLVWLALIAAVMNITIAPSDAIIGAAIGYLSLWSVYWLFKLATGKEGMGYGDFKLLAVFGALLGWQAILT
IVLLSSVVGALIGMLQIIIQGKDKTTPIPFGPYLAIAGWVTLLWGEQIQTIYFSYLGH

Nucleotide

• Length: 897 bp

>NTDB_id=472126 H3302_RS13185 WP_180311093.1 2915426..2916322(+) (pilD) [Pseudoalteromonas sp. MT33b]
ATGCAAAATTTTTTCCTTGATATAGCCACCGTGATGCAATCTCAACAGTGGTTTTATTTGTTAACTGTAGGACTTGTGAG
TCTGTGTATTGGTAGCTTTTTAAATGTCGTTATTTACAGGTTACCACTGATGATGAAACGAGAATGGCAATCAGAGTGCC
GTCTGTTATTGGCCGATGAGCAAACAATTAACCATACTGAAGAGCCTACTCCCTTTAATTTAGTCACACCTAATTCAACC
TGCCCACAATGTAAGGCACCGATTAAGATTTGGCAGAACATTCCTGTTATCAGCTGGTTAATACTCAAAGGCCGCTGTGC
AAGTTGTGAGGCGCCAATCTCTGTTCGCTACCCCATTGTTGAAATGCTAACAGCCAGCTTAAGCATCGCGGTTGCAGTTG
TATTTGGCGCATCTGAACTTGCGTTACTTTATATTGTAATCACATGGGTGCTCATTGCGCTTACGTTCATTGATATTGAT
CATATGCTTTTGCCTGACCAACTTACCTTACCGCTCGTTTGGCTTGCATTGATAGCAGCCGTGATGAACATCACAATCGC
CCCTTCTGATGCGATTATTGGCGCTGCAATTGGCTATTTAAGTTTATGGAGTGTGTATTGGCTCTTTAAACTTGCTACTG
GCAAAGAAGGCATGGGGTATGGCGATTTTAAATTACTCGCGGTATTTGGAGCGTTACTTGGTTGGCAGGCTATTTTAACT
ATCGTGTTGCTTTCGAGTGTCGTTGGCGCTCTTATTGGTATGCTGCAAATTATTATTCAAGGCAAAGATAAAACCACGCC
TATTCCCTTTGGCCCCTACCTTGCGATAGCCGGTTGGGTAACCTTATTGTGGGGTGAGCAAATTCAAACTATCTATTTTA
GCTATTTAGGTCATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-135)

• Type IV leader peptidase family (Peptidase_A24) (145-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	54.704	96.309	0.527
pilD	Acinetobacter nosocomialis M2	54.355	96.309	0.523
pilD	Vibrio campbellii strain DS40M4	53.147	95.973	0.51
pilD	Vibrio cholerae strain A1552	53.047	93.624	0.497
pilD	Neisseria gonorrhoeae MS11	43.846	87.248	0.383