Detailed information NTG0471690

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: H3303_RS23115
• Genome accession: NZ_CP059738
• Coordinates: 5256907..5259141 (-)
• Length: 744 a.a.
• NCBI ID: WP_175553493.1
• Uniprot ID: -
• Organism: Pseudomonas sp. 29A
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5251907..5264141

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H3303_RS23080 (H3303_23080)	murB	5252287..5253306 (-)	1020	WP_016986040.1	UDP-N-acetylmuramate dehydrogenase	-
H3303_RS23085 (H3303_23085)	-	5253303..5253767 (-)	465	WP_016986041.1	low molecular weight protein-tyrosine-phosphatase	-
H3303_RS23090 (H3303_23090)	kdsB	5253767..5254531 (-)	765	WP_016986042.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
H3303_RS23095 (H3303_23095)	-	5254528..5254713 (-)	186	WP_175553495.1	Trm112 family protein	-
H3303_RS23100 (H3303_23100)	lpxK	5254735..5255745 (-)	1011	WP_175553494.1	tetraacyldisaccharide 4'-kinase	-
H3303_RS23105 (H3303_23105)	-	5255745..5256173 (-)	429	WP_007908223.1	biopolymer transporter ExbD	-
H3303_RS23110 (H3303_23110)	exbB	5256170..5256805 (-)	636	WP_007908216.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
H3303_RS23115 (H3303_23115)	comA	5256907..5259141 (-)	2235	WP_175553493.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
H3303_RS23120 (H3303_23120)	-	5259278..5259796 (+)	519	WP_175553492.1	DUF2062 domain-containing protein	-
H3303_RS23125 (H3303_23125)	-	5259888..5260667 (-)	780	WP_008087860.1	ABC transporter permease	-
H3303_RS23130 (H3303_23130)	-	5260664..5261596 (-)	933	WP_016986045.1	ABC transporter ATP-binding protein	-
H3303_RS23135 (H3303_23135)	-	5261720..5262343 (-)	624	WP_016986046.1	glutathione S-transferase family protein	-
H3303_RS23140 (H3303_23140)	-	5262387..5263046 (-)	660	WP_175553491.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81934.10 Da
• Isoelectric Point: 10.3425

>NTDB_id=471690 H3303_RS23115 WP_175553493.1 5256907..5259141(-) (comA) [Pseudomonas sp. 29A]
MRTGMMALAVGLLAPVFMSALPPVWLLLLLPVVALMLLPFRSYPLAFLLFGFTWASVGAQWALNDRLPAELDGETRWVEG
RVVGLPQNSDGVVRFELADALSRHEKLPPLMRLAWYAGPPVNSGERWRLAVKLKRAGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLSEARWAWRDSIRQRLLEVDAQGRGGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYML
VGGLARFGLWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLAFNAVLLFDPL
ASLRPGFWLSFTAVAVLIFTFGGRLGGWRWWQTWTRAQWLIAIGLCPVLLALNLPISLSGPLANLLAVPWVSLVALPPAL
LGTLMLPVPHVGEGLLWLAGGLIDALFRALAVIAGQWPAWTAAAVPGWVWLLGSLGAVLLLLPRGVPMRPLGWPLLLLLV
VPPRERLDAGLADIWQLDVGQGLAILIRTRHHTLLYDAGPRFGDFDLGERVVLPALRKLSVKKLDLMLLSHADADHAGGA
LAITRGLTVDQVISGDPAGLPAQLRAEACESGRQWQWDGVRFQLWQWADARDSNQRSCVLQIEANGERLLLTGDIDTHAE
RSLLDSPLVAPTHWLQAPHHGSRSSSSMALLNVLKPESVLISRGHGNSFGHPHPTVLARYRKQGLRIYDSAEQGAIHLQL
GRFKPPWTMRQQRRFWRDTPALAR

Nucleotide

• Length: 2235 bp

>NTDB_id=471690 H3303_RS23115 WP_175553493.1 5256907..5259141(-) (comA) [Pseudomonas sp. 29A]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTATGTCGGCATTACCGCCGGTCTGGTTGCT
GCTGTTATTGCCGGTCGTGGCTTTGATGTTGCTGCCGTTTCGCAGCTATCCGTTGGCGTTTCTGCTGTTTGGCTTCACGT
GGGCCAGTGTCGGTGCGCAGTGGGCGTTGAATGATCGTTTGCCGGCCGAGCTGGATGGCGAAACCCGGTGGGTTGAAGGG
CGGGTGGTCGGGTTGCCGCAGAACAGCGACGGCGTGGTGCGTTTCGAATTGGCTGATGCGCTCTCCCGTCACGAAAAACT
GCCGCCGCTGATGCGCCTTGCCTGGTACGCCGGGCCGCCGGTCAACAGCGGCGAGCGCTGGCGTCTGGCGGTCAAGCTCA
AGCGTGCGGGTGGTTTGCTCAATCCGGACGCTTTCGATTACGAGGCGTGGTTACTGGCGCAACGCATCGGTGCGACTGGC
ACGATCAAGGACGGCCAACGCCTGAGCGAGGCACGCTGGGCCTGGCGCGACAGTATTCGGCAGCGTTTGCTCGAGGTGGA
CGCACAGGGGCGGGGCGGGGCATTGGCGGCGCTGGTGCTGGGCGATGGCTCGGGACTCAGTCGTGAGGACTGGCAGATTT
TGCAGGATACCGGCACCGTGCACTTGCTGGTGATTTCCGGTCAGCACATTGGCTTGCTGGCGGCGGTGATGTACATGCTC
GTCGGCGGATTGGCCCGCTTTGGCCTGTGGCCGCTGCGCTGGCCCTGGCTGCCGTGGGCCTGCGGCCTGGCATTCGCGGC
TGCGCTCGGTTATGGCCTCCTTGCCGGTTTCGACGTGCCGGTACAGCGCGCCTGCGTGATGGTCGGGCTGGTACTGTTGT
GGCGCCTGCGCTTTCGTCATCTTGGTGCGTGGTGGCCGTTGTTGCTGGCGTTCAATGCGGTACTTTTGTTCGATCCCCTG
GCCAGCCTGCGCCCCGGCTTCTGGTTGTCCTTTACGGCCGTAGCAGTGTTGATTTTTACCTTTGGTGGCCGCTTGGGTGG
GTGGCGTTGGTGGCAAACCTGGACGCGGGCGCAATGGTTGATAGCCATCGGTCTGTGCCCGGTGTTGCTGGCACTGAATC
TGCCGATCAGCCTTAGCGGGCCATTGGCAAATCTGTTGGCGGTGCCTTGGGTCAGCCTCGTGGCGTTGCCGCCGGCACTG
CTCGGCACGCTGATGTTACCGGTGCCGCATGTCGGGGAAGGTCTTTTGTGGCTGGCCGGCGGTTTGATCGACGCGCTGTT
TCGCGCTTTGGCGGTGATTGCCGGGCAGTGGCCGGCATGGACAGCCGCCGCCGTGCCGGGCTGGGTCTGGTTGCTCGGCA
GCCTCGGTGCCGTGTTGTTGCTGTTGCCGCGCGGTGTGCCGATGCGCCCGCTGGGCTGGCCATTGCTGTTGCTATTGGTT
GTGCCGCCACGCGAACGCCTGGATGCGGGATTGGCCGACATCTGGCAACTCGATGTCGGCCAAGGCCTGGCCATTCTGAT
CCGCACGCGTCATCACACGCTGCTGTATGACGCCGGGCCGCGCTTTGGCGACTTTGATCTCGGCGAGCGGGTGGTGCTGC
CCGCGCTGCGCAAACTGAGTGTAAAAAAACTCGATCTGATGCTGCTCAGCCATGCGGACGCCGATCACGCTGGCGGCGCT
TTGGCGATCACCCGTGGTCTGACCGTCGATCAAGTGATCAGCGGCGACCCGGCGGGATTGCCCGCGCAGTTGCGCGCCGA
AGCCTGCGAAAGCGGCCGGCAATGGCAGTGGGACGGCGTGCGTTTTCAACTCTGGCAGTGGGCGGATGCCCGCGACAGCA
ATCAGCGTTCCTGCGTATTGCAGATCGAGGCCAATGGCGAGCGCCTGCTGCTGACCGGCGATATCGACACCCACGCCGAA
CGCTCGCTGCTCGACAGTCCGCTGGTTGCCCCGACGCACTGGCTGCAAGCGCCTCACCATGGCAGCCGCAGTTCATCGTC
GATGGCGCTGCTTAACGTCTTGAAGCCAGAGTCCGTGCTGATTTCGCGAGGTCATGGCAATTCATTTGGCCATCCCCACC
CAACCGTGCTCGCGCGTTATCGGAAACAGGGCCTGCGCATTTACGACAGCGCCGAGCAGGGCGCCATTCATCTGCAACTG
GGCCGCTTCAAACCGCCGTGGACGATGCGTCAACAGCGGCGTTTCTGGCGTGATACGCCTGCGCTCGCCCGTTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.785	96.371	0.595
comA	Ralstonia pseudosolanacearum GMI1000	32.55	100	0.372