Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   H3303_RS23110 Genome accession   NZ_CP059738
Coordinates   5256170..5256805 (-) Length   211 a.a.
NCBI ID   WP_007908216.1    Uniprot ID   J2QQ31
Organism   Pseudomonas sp. 29A     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5251170..5261805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3303_RS23075 (H3303_23075) - 5251571..5252041 (-) 471 WP_175553496.1 (2Fe-2S)-binding protein -
  H3303_RS23080 (H3303_23080) murB 5252287..5253306 (-) 1020 WP_016986040.1 UDP-N-acetylmuramate dehydrogenase -
  H3303_RS23085 (H3303_23085) - 5253303..5253767 (-) 465 WP_016986041.1 low molecular weight protein-tyrosine-phosphatase -
  H3303_RS23090 (H3303_23090) kdsB 5253767..5254531 (-) 765 WP_016986042.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  H3303_RS23095 (H3303_23095) - 5254528..5254713 (-) 186 WP_175553495.1 Trm112 family protein -
  H3303_RS23100 (H3303_23100) lpxK 5254735..5255745 (-) 1011 WP_175553494.1 tetraacyldisaccharide 4'-kinase -
  H3303_RS23105 (H3303_23105) - 5255745..5256173 (-) 429 WP_007908223.1 biopolymer transporter ExbD -
  H3303_RS23110 (H3303_23110) exbB 5256170..5256805 (-) 636 WP_007908216.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  H3303_RS23115 (H3303_23115) comA 5256907..5259141 (-) 2235 WP_175553493.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  H3303_RS23120 (H3303_23120) - 5259278..5259796 (+) 519 WP_175553492.1 DUF2062 domain-containing protein -
  H3303_RS23125 (H3303_23125) - 5259888..5260667 (-) 780 WP_008087860.1 ABC transporter permease -
  H3303_RS23130 (H3303_23130) - 5260664..5261596 (-) 933 WP_016986045.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.04 Da        Isoelectric Point: 6.8771

>NTDB_id=471689 H3303_RS23110 WP_007908216.1 5256170..5256805(-) (exbB) [Pseudomonas sp. 29A]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGRA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=471689 H3303_RS23110 WP_007908216.1 5256170..5256805(-) (exbB) [Pseudomonas sp. 29A]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGCTCCATCGCGGCCATGGCGATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGCCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAATTGCGTGCCAATTCGCCTCTGGGGGAAATCCTCGCTGCCGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAGGCCGCCGCCCGCGTCATTCACGAACTCGAACGCTACGT
CAATGCGCTGGGCACCATTGCCGCCATGTCGCCGTTGCTCGGTCTGCTGGGCACGGTGCTGGGCATGATCGACATTTTCA
GCGCCTTTACTGGCTCAGGCATGACCACCAACGCTTCGGTATTGGCTGGTGGTATTTCCAAAGCGCTGATCACCACAGCT
GCGGGTCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGGTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGTAT
GGAACAGGAAGCGATCAAACTGGTTGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGAGGGCCGCGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J2QQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848