Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   I6K09_RS19510 Genome accession   NZ_CP069957
Coordinates   4073448..4074107 (-) Length   219 a.a.
NCBI ID   WP_001221493.1    Uniprot ID   Q3YXL4
Organism   Escherichia coli strain FDAARGOS_1279     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4068448..4079107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K09_RS19490 (I6K09_19490) - 4069441..4070703 (-) 1263 WP_000608644.1 IS1380-like element ISEcp1 family transposase -
  I6K09_RS19495 (I6K09_19495) mdaB 4070890..4071405 (-) 516 Protein_3853 NADPH:quinone oxidoreductase MdaB -
  I6K09_RS19500 (I6K09_19500) ygiZ 4071724..4072056 (+) 333 WP_023149630.1 DUF2645 family protein -
  I6K09_RS19505 (I6K09_19505) qseC 4072102..4073451 (-) 1350 WP_000673402.1 quorum sensing histidine kinase QseC -
  I6K09_RS19510 (I6K09_19510) ciaR 4073448..4074107 (-) 660 WP_001221493.1 quorum sensing response regulator transcription factor QseB Regulator
  I6K09_RS19515 (I6K09_19515) ygiW 4074259..4074651 (+) 393 WP_000712658.1 OB fold stress tolerance protein YgiW -
  I6K09_RS19520 (I6K09_19520) ygiV 4074704..4075186 (+) 483 WP_000183505.1 GyrI-like domain-containing protein -
  I6K09_RS19525 (I6K09_19525) mqsR 4075391..4075687 (+) 297 WP_000415584.1 type II toxin-antitoxin system toxin MqsR -
  I6K09_RS19530 (I6K09_19530) mqsA 4075689..4076084 (+) 396 WP_000650107.1 type II toxin-antitoxin system antitoxin MqsA -
  I6K09_RS19535 (I6K09_19535) ygiS 4076217..4077824 (+) 1608 WP_001295629.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24687.63 Da        Isoelectric Point: 6.9850

>NTDB_id=471379 I6K09_RS19510 WP_001221493.1 4073448..4074107(-) (ciaR) [Escherichia coli strain FDAARGOS_1279]
MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTA
RDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGEK

Nucleotide


Download         Length: 660 bp        

>NTDB_id=471379 I6K09_RS19510 WP_001221493.1 4073448..4074107(-) (ciaR) [Escherichia coli strain FDAARGOS_1279]
ATGCGAATTTTACTGATAGAAGATGACATGCTGATTGGCGACGGCATCAAAACGGGCCTTAGTAAAATGGGTTTTAGCGT
CGACTGGTTTACACAAGGTCGTCAGGGAAAAGAGGCGCTTTATAGCGCACCTTATGATGCGGTGATCCTGGATTTAACCT
TACCAGGCATGGATGGTCGCGATATTTTGCGCGAATGGCGAGAAAAAGGTCAGCGTGAGCCGGTACTGATCCTGACCGCG
CGCGATGCGCTGGCGGAACGTGTAGAAGGGCTGCGTCTGGGAGCTGACGATTATCTGTGTAAACCTTTTGCGTTGATAGA
AGTCGCCGCCAGGCTGGAAGCTCTGATGCGCCGAACCAACGGCCAGGCCAGCAACGAGCTGCGCCACGGTAACGTCATGC
TCGACCCCGGCAAACGTATCGCCACGCTGGCTGGCGAACCCTTAACACTGAAACCAAAAGAATTTGCCCTGCTGGAATTA
CTGATGCGTAACGCTGGTCGGGTACTGCCGCGCAAACTGATTGAAGAGAAACTGTATACCTGGGACGAAGAGGTCACCAG
TAATGCCGTTGAAGTGCATGTGCATCATCTGCGACGCAAACTCGGTAGTGATTTTATTCGTACCGTGCATGGTATTGGTT
ACACATTAGGTGAGAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(145-216)

Response regulator receiver domain (Response_reg)

(3-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3YXL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

38.326

100

0.397
  ciaR Streptococcus pneumoniae D39

38.326

100

0.397
  ciaR Streptococcus pneumoniae R6

38.326

100

0.397
  ciaR Streptococcus pneumoniae TIGR4

38.326

100

0.397
  ciaR Streptococcus mutans UA159

35.874

100

0.365