Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H3V22_RS09515 Genome accession   NZ_CP059679
Coordinates   1902955..1903488 (+) Length   177 a.a.
NCBI ID   WP_016999204.1    Uniprot ID   -
Organism   Mammaliicoccus lentus strain H29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1897955..1908488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3V22_RS09490 (H3V22_09485) - 1899459..1900292 (+) 834 WP_016999199.1 ParB/RepB/Spo0J family partition protein -
  H3V22_RS09495 (H3V22_09490) - 1900305..1901189 (+) 885 WP_016999200.1 mechanosensitive ion channel family protein -
  H3V22_RS09500 (H3V22_09495) - 1901213..1901410 (+) 198 WP_016999201.1 DUF951 domain-containing protein -
  H3V22_RS09505 (H3V22_09500) ychF 1901412..1902512 (+) 1101 WP_016999202.1 redox-regulated ATPase YchF -
  H3V22_RS09510 (H3V22_09505) rpsF 1902631..1902924 (+) 294 WP_016999203.1 30S ribosomal protein S6 -
  H3V22_RS09515 (H3V22_09510) ssbA 1902955..1903488 (+) 534 WP_016999204.1 single-stranded DNA-binding protein Machinery gene
  H3V22_RS09520 (H3V22_09515) rpsR 1903543..1903785 (+) 243 WP_016999205.1 30S ribosomal protein S18 -
  H3V22_RS09525 (H3V22_09520) - 1904026..1904925 (-) 900 WP_182093675.1 Abi family protein -
  H3V22_RS09530 (H3V22_09525) - 1905204..1906043 (+) 840 WP_182093676.1 DUF2785 domain-containing protein -
  H3V22_RS09535 (H3V22_09530) - 1906064..1906444 (-) 381 WP_064211272.1 YbgA family protein -
  H3V22_RS09540 (H3V22_09535) - 1906498..1906971 (-) 474 Protein_1859 pyrimidine dimer DNA glycosylase/endonuclease V -
  H3V22_RS09545 (H3V22_09540) coaA 1907211..1908113 (-) 903 WP_016999210.1 type I pantothenate kinase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19815.49 Da        Isoelectric Point: 4.9532

>NTDB_id=471311 H3V22_RS09515 WP_016999204.1 1902955..1903488(+) (ssbA) [Mammaliicoccus lentus strain H29]
MINRVVLVGRLTKDPEYRVTPSGVQVATFTLAINRTFTNQQGEREADFINCVVFRRPAENVNNYLSKGSLAGVEGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKGANQRQSGNDNQSYNQKNNNEFQNYGQDFGGNQQGQKAPSNQQQSNNNQQSSNP
FANANGPIDISDDDLPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=471311 H3V22_RS09515 WP_016999204.1 1902955..1903488(+) (ssbA) [Mammaliicoccus lentus strain H29]
ATGATTAATCGTGTTGTATTAGTCGGTCGGTTAACTAAAGATCCGGAATACAGAGTAACACCCTCAGGCGTTCAAGTTGC
TACTTTTACTTTAGCTATTAATCGTACTTTTACGAATCAGCAAGGTGAAAGAGAAGCTGACTTTATCAACTGTGTCGTTT
TTAGACGTCCCGCAGAGAATGTAAACAATTACTTATCTAAAGGTAGTCTTGCAGGTGTTGAAGGTCGTTTACAATCTCGT
AGCTACGAGAACCAAGAAGGTCGTCGTGTTTATGTAACTGAAGTTGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAGG
CGCAAACCAACGTCAATCAGGTAATGATAACCAATCATACAACCAGAAAAATAATAACGAATTCCAAAACTATGGACAAG
ACTTTGGCGGTAACCAACAAGGCCAAAAAGCACCTTCAAATCAACAACAGTCAAATAATAATCAACAATCAAGTAACCCA
TTTGCAAATGCTAATGGACCAATTGATATCAGTGATGATGATTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.538

100

0.633
  ssb Latilactobacillus sakei subsp. sakei 23K

55.056

100

0.554
  ssb Vibrio cholerae strain A1552

35.359

100

0.362