Detailed information NTG0471042

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: IXO630_RS07550
• Genome accession: NZ_CP059585
• Coordinates: 1644816..1646267 (+)
• Length: 483 a.a.
• NCBI ID: WP_171970756.1
• Uniprot ID: -
• Organism: Xanthomonas oryzae pv. oryzae strain IXO630
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1639965..1651016	1644816..1646267	within	0

Gene organization within MGE regions

Location: 1639965..1651016

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IXO630_RS07530 (IXO630_007445)	-	1639965..1640456 (-)	492	WP_075239558.1	hypothetical protein	-
IXO630_RS07535 (IXO630_007450)	sucD	1640629..1641504 (-)	876	WP_012444445.1	succinate--CoA ligase subunit alpha	-
IXO630_RS07540 (IXO630_007455)	sucC	1641529..1642698 (-)	1170	WP_011258367.1	ADP-forming succinate--CoA ligase subunit beta	-
IXO630_RS07545 (IXO630_007460)	-	1642932..1644545 (+)	1614	WP_011258366.1	HAMP domain-containing sensor histidine kinase	-
IXO630_RS07550 (IXO630_007465)	pilR	1644816..1646267 (+)	1452	WP_171970756.1	sigma-54 dependent transcriptional regulator	Regulator
IXO630_RS07555 (IXO630_007470)	-	1646340..1646546 (+)	207	WP_027703281.1	YhfG family protein	-
IXO630_RS07560 (IXO630_007475)	-	1646839..1647117 (+)	279	WP_229001933.1	Fic family protein	-
IXO630_RS07565 (IXO630_007480)	pilB	1647126..1648859 (-)	1734	WP_011408072.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IXO630_RS07570 (IXO630_007485)	-	1648894..1650420 (-)	1527	WP_075239559.1	hypothetical protein	-
IXO630_RS07575 (IXO630_007490)	-	1650390..1650959 (-)	570	WP_229001934.1	hypothetical protein	-

Sequence

Protein

• Length: 483 a.a.
• Molecular weight: 52446.18 Da
• Isoelectric Point: 6.8290

>NTDB_id=471042 IXO630_RS07550 WP_171970756.1 1644816..1646267(+) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO630]
MRRAPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLSRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNHDRPAPPPPPEQASRL
LGDSSAMESLRATIGKVARSQAPIYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGA
HADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYR
INVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRTIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISATD
LRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKL
GME

Nucleotide

• Length: 1452 bp

>NTDB_id=471042 IXO630_RS07550 WP_171970756.1 1644816..1646267(+) (pilR) [Xanthomonas oryzae pv. oryzae strain IXO630]
TTGCGCCGCGCCCCACTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGAGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCCTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCTTGGTCAAGCACGCGCTGGAATTGAACAACCACGACCGCCCTGCTCCGCCGCCGCCACCTGAACAGGCCAGCCGCCTG
CTCGGCGACTCCAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGATCTACATCGT
CGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCGTCC
CGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGCGCG
CATGCCGACAAGCCCGGGCTATTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTTGCA
GATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGGACG
TACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTACCGC
ATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCATCGC
GCGCCTGGCGCACAGCCACGGCCGCACCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCTTCC
CCGGCAACGTGCGCGAACTGGAAAACATCCTTGAACGCGCCCTTGCCCTGGCCGAAGACGACCAGATCAGCGCCACCGAC
CTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGTCGT
CGACATCGACCCCGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCGATCCAGAAAGCGCTGGAAG
AAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGTTGGGTATCACGTTTCGGGCGCTGCGTTACAAGCTCAAGAAGTTG
GGGATGGAGTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (440-480)

• Sigma-54 interaction domain (Sigma54_activat) (161-326)

• Response regulator receiver domain (Response_reg) (28-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.987	95.652	0.602
pilR	Acinetobacter baumannii strain A118	48.268	95.652	0.462