Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   I6K87_RS08615 Genome accession   NZ_CP069892
Coordinates   1729492..1731846 (-) Length   784 a.a.
NCBI ID   WP_204982849.1    Uniprot ID   -
Organism   Streptococcus anginosus strain FDAARGOS_1357     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1724492..1736846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6K87_RS08600 (I6K87_08600) - 1725745..1726434 (+) 690 WP_049533032.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  I6K87_RS08605 (I6K87_08605) - 1726757..1727877 (-) 1121 Protein_1655 IS110 family transposase -
  I6K87_RS08610 (I6K87_08610) - 1728192..1729447 (+) 1256 Protein_1656 ISL3 family transposase -
  I6K87_RS08615 (I6K87_08615) recD/recD2/recDB 1729492..1731846 (-) 2355 WP_204982849.1 ATP-dependent RecD-like DNA helicase Machinery gene
  I6K87_RS08620 (I6K87_08620) lepB 1732173..1732787 (-) 615 WP_049534095.1 signal peptidase I -
  I6K87_RS08625 (I6K87_08625) rnhC 1732791..1733681 (-) 891 WP_049534096.1 ribonuclease HIII -
  I6K87_RS08630 (I6K87_08630) - 1733767..1734072 (+) 306 WP_004224416.1 hypothetical protein -
  I6K87_RS08635 (I6K87_08635) - 1734069..1734617 (+) 549 WP_049534097.1 CvpA family protein -

Sequence

Protein


Download         Length: 784 a.a.        Molecular weight: 88323.51 Da        Isoelectric Point: 4.7471

>NTDB_id=471043 I6K87_RS08615 WP_204982849.1 1729492..1731846(-) (recD/recD2/recDB) [Streptococcus anginosus strain FDAARGOS_1357]
MEFYFSGTIERIIFENPSSFFRILLIDIDDTDADFDDFEIIVTGTMADIMEGEDYTFWGNLVQHPKYGEQLKITRYERAK
PTSKGLVKYFSSDHFKGIGVKTAQKIVDLYGDNTIDKVLAEPEKLKDIAGLSAKNREAFLTKLRQNYGTERILAKLSEYG
IPNKLAFQVQDFYKEETLEIVEHYPYQLVEDIQGIGFKIADQLAQSLGIEGTAPERFRAGLLHTLLTQSMEKGDTYLEAK
ELLEHTIELLESSRQIELDPSSVADELAHLIEEDKVQNIDTKIFENSLFFAEEGIRSNLLRILEKGKQNKFEPKKIEAAI
AQIENEFAISYDVTQKQAICDAINHKIFILTGGPGTGKTTVINGIIAVYALLHGLDLRKSQDLPILLAAPTGRAARRMNE
LTGLPSATIHRHLGMTGDGDTSHLDDYLDADFIIVDEFSMVDTWLANQLLSNISSNTKLLIVGDADQLPSVSPGQVLADL
LKIPLLPQTKLEKIYRQSKDSTIVTLASQIQKGILPTDFTEKKADRSYFEAHSEHIPKMIERIVEAALRSGIPAQDVQVL
APMYRGQAGIDHINQLMQNLINPVETEQIIFEATDCQYRQGDKVIHLVNDAESNVFNGDLGYITDLLPAKYTDSKQDELT
INFDGNEVIYPRSEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSHRMLQRNLIYTAITRAKSKLILLGEKSAFDFAVKN
TGTARNTYLIQRFSDLLTDEKVIHTSVNNLETTVEKYILTEENFLKINPMIGITDEDIQNVFGE

Nucleotide


Download         Length: 2355 bp        

>NTDB_id=471043 I6K87_RS08615 WP_204982849.1 1729492..1731846(-) (recD/recD2/recDB) [Streptococcus anginosus strain FDAARGOS_1357]
ATGGAATTTTACTTTTCAGGCACTATTGAACGCATTATTTTTGAAAATCCCAGCAGTTTCTTTCGGATTCTGCTGATAGA
TATTGACGACACCGATGCAGATTTTGATGATTTTGAGATTATTGTCACGGGCACCATGGCGGATATTATGGAGGGCGAAG
ACTATACTTTTTGGGGAAACCTCGTGCAACACCCTAAATATGGGGAACAGCTCAAAATAACACGCTATGAGCGGGCAAAG
CCAACCAGCAAAGGCTTAGTCAAATATTTTTCAAGCGATCATTTTAAAGGGATTGGTGTAAAAACAGCGCAAAAAATCGT
GGATCTCTATGGCGATAACACGATTGACAAAGTTTTAGCAGAGCCAGAAAAATTAAAGGATATTGCAGGTCTTTCTGCCA
AAAATCGCGAAGCCTTTCTCACGAAACTAAGACAAAATTACGGTACCGAGAGAATCCTTGCCAAGCTATCTGAATACGGT
ATCCCCAACAAACTAGCTTTTCAAGTGCAAGATTTCTACAAGGAAGAAACCTTAGAAATCGTGGAACACTATCCTTACCA
ATTGGTAGAAGACATTCAAGGAATTGGTTTTAAAATTGCCGACCAACTGGCACAAAGCTTAGGGATTGAAGGTACCGCTC
CAGAGCGTTTTCGTGCTGGGTTGCTTCACACGCTCCTCACTCAATCTATGGAAAAAGGCGACACCTATCTTGAAGCAAAA
GAACTTCTGGAACATACGATTGAACTCCTCGAAAGTTCCCGTCAGATTGAGTTAGACCCAAGTTCTGTTGCGGATGAGCT
GGCACATTTGATTGAAGAAGATAAAGTTCAAAATATTGATACAAAGATTTTTGAAAACAGTCTCTTTTTTGCCGAAGAAG
GGATTCGTAGCAATCTCTTGCGCATTTTAGAAAAAGGGAAGCAAAACAAGTTTGAACCGAAAAAGATCGAAGCTGCTATT
GCTCAAATCGAAAATGAGTTTGCCATTTCCTATGATGTGACTCAAAAACAAGCAATTTGTGACGCTATCAATCACAAAAT
TTTTATCCTAACGGGTGGCCCCGGAACAGGAAAAACGACCGTCATCAATGGAATCATTGCTGTTTATGCTCTGCTGCATG
GGTTGGATTTGCGCAAATCTCAGGATTTGCCTATCCTGCTAGCAGCTCCTACTGGGCGTGCTGCCAGACGCATGAATGAA
TTAACAGGGCTTCCAAGCGCTACAATTCATCGGCATTTAGGCATGACAGGAGACGGCGACACCAGCCATTTAGACGATTA
TTTGGACGCAGACTTTATTATTGTGGACGAATTTTCAATGGTAGATACTTGGTTAGCCAATCAACTCCTCAGCAACATTT
CATCAAACACCAAACTCCTAATCGTCGGAGATGCCGACCAGCTGCCTTCTGTCAGCCCCGGACAAGTGCTGGCAGATTTG
CTGAAAATCCCTCTTCTTCCGCAGACCAAATTAGAAAAAATTTATCGACAAAGCAAAGACTCCACTATCGTCACCTTAGC
CAGTCAGATTCAAAAAGGCATCCTCCCAACTGATTTCACTGAGAAAAAAGCTGACCGTTCTTATTTTGAAGCGCATAGTG
AGCATATCCCGAAGATGATTGAGCGCATCGTAGAGGCTGCTCTCCGCAGCGGCATTCCAGCTCAAGATGTGCAGGTGCTT
GCGCCTATGTACCGCGGACAGGCTGGGATTGACCACATCAATCAACTCATGCAAAATCTAATCAATCCTGTCGAAACAGA
ACAAATCATTTTTGAAGCAACTGATTGTCAATATCGACAAGGCGACAAGGTGATTCATCTGGTCAATGATGCGGAAAGCA
ATGTCTTTAACGGCGATTTGGGTTATATCACTGATTTGCTGCCAGCAAAATATACGGACTCTAAACAGGACGAGCTGACT
ATCAACTTTGATGGCAATGAAGTCATTTACCCACGCAGCGAATGGTATAAAATTCGTCTGGCATACGCTATGAGTATCCA
CAAATCTCAGGGTAGTGAATTTCCTGTAGTCATTTTACCGATTACATCCAGCAGCCACCGTATGCTGCAACGCAATCTTA
TCTATACTGCTATCACCCGTGCCAAGAGCAAATTGATTCTTCTTGGGGAAAAGTCTGCCTTTGACTTTGCTGTCAAAAAC
ACTGGCACAGCTCGCAATACCTATCTAATCCAACGCTTTTCAGACCTCCTAACTGATGAAAAAGTTATACACACTTCTGT
GAATAATTTGGAAACAACTGTGGAAAAATATATCTTGACTGAGGAAAATTTCTTGAAAATCAACCCTATGATTGGAATAA
CGGATGAGGATATTCAAAATGTTTTTGGAGAATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(146-236)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(661-708)

AAA domain (AAA_30)

(331-527)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(573-643)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.901

95.281

0.399