Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HBNCFIEN_RS05005 Genome accession   NZ_CP059576
Coordinates   1200497..1201090 (+) Length   197 a.a.
NCBI ID   WP_182392979.1    Uniprot ID   -
Organism   Legionella sp. PC997     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1195497..1206090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBNCFIEN_RS04990 (HBNCFIEN_01008) - 1195627..1197996 (-) 2370 WP_182392976.1 penicillin-binding protein 1A -
  HBNCFIEN_RS04995 (HBNCFIEN_01009) - 1198167..1199183 (-) 1017 WP_182392977.1 hypothetical protein -
  HBNCFIEN_RS05000 (HBNCFIEN_01010) pilM 1199426..1200490 (+) 1065 WP_182392978.1 pilus assembly protein PilM Machinery gene
  HBNCFIEN_RS05005 (HBNCFIEN_01011) pilN 1200497..1201090 (+) 594 WP_182392979.1 PilN domain-containing protein Machinery gene
  HBNCFIEN_RS05010 (HBNCFIEN_01012) pilO 1201087..1201689 (+) 603 WP_182392980.1 type 4a pilus biogenesis protein PilO Machinery gene
  HBNCFIEN_RS05015 (HBNCFIEN_01013) pilP 1201686..1202201 (+) 516 WP_182392981.1 pilus assembly protein PilP Machinery gene
  HBNCFIEN_RS05020 (HBNCFIEN_01014) pilQ 1202210..1204315 (+) 2106 WP_182392982.1 type IV pilus secretin PilQ Machinery gene
  HBNCFIEN_RS05025 (HBNCFIEN_01015) aroK 1204636..1205163 (+) 528 WP_220471005.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 22915.67 Da        Isoelectric Point: 7.2789

>NTDB_id=470898 HBNCFIEN_RS05005 WP_182392979.1 1200497..1201090(+) (pilN) [Legionella sp. PC997]
MTQINLLPWRELKREQEKKLFMTMLLLCIVLSAFIVFLINSYASGLVSNQTTRNEMLQKEINDMDAQIKEIKNLKKTKEL
LISRMSIVQHLQSTRTLMVHLFDELINVIPAGVYFTQINGKNDVITVIGYAESNTFVSILMRNIENNEWLHDPVLSQIKR
EDQDKDKNKDNNKQESAENEFKLTFVLAPQFQIGIKL

Nucleotide


Download         Length: 594 bp        

>NTDB_id=470898 HBNCFIEN_RS05005 WP_182392979.1 1200497..1201090(+) (pilN) [Legionella sp. PC997]
ATGACGCAAATTAATCTTCTTCCATGGCGAGAGCTCAAGCGGGAGCAGGAGAAAAAGTTGTTCATGACTATGCTGCTTTT
ATGCATTGTGCTCTCGGCGTTTATTGTTTTTTTAATTAATTCTTATGCATCAGGGTTGGTAAGTAATCAAACCACACGCA
ACGAGATGCTCCAGAAAGAAATTAATGATATGGATGCGCAAATAAAGGAAATAAAAAATTTAAAAAAAACAAAAGAATTG
CTGATTTCTAGAATGTCTATAGTACAGCATTTACAATCTACGCGAACACTAATGGTTCATTTATTTGATGAATTGATTAA
TGTAATCCCGGCTGGTGTCTATTTTACTCAGATAAATGGGAAAAATGATGTTATAACCGTTATTGGCTATGCGGAATCGA
ATACTTTTGTTTCAATATTAATGAGGAATATAGAAAATAATGAGTGGCTCCATGATCCTGTCCTAAGTCAAATTAAAAGA
GAGGATCAAGATAAGGATAAAAATAAAGATAATAACAAACAAGAATCTGCAGAGAATGAGTTTAAGTTAACTTTTGTGCT
TGCGCCTCAGTTCCAGATCGGGATAAAACTATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

63.351

96.954

0.614