Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H3L91_RS04935 Genome accession   NZ_CP059571
Coordinates   965124..965450 (+) Length   108 a.a.
NCBI ID   WP_007343959.1    Uniprot ID   F2BGU8
Organism   Neisseria bacilliformis strain DSM 23338     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 960124..970450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L91_RS04935 (H3L91_04935) comE 965124..965450 (+) 327 WP_007343959.1 helix-hairpin-helix domain-containing protein Machinery gene
  H3L91_RS04940 (H3L91_04940) clpX 965754..967022 (-) 1269 WP_007342453.1 ATP-dependent Clp protease ATP-binding subunit ClpX -
  H3L91_RS04945 (H3L91_04945) - 967456..968400 (+) 945 WP_007342455.1 serine hydrolase -
  H3L91_RS04950 (H3L91_04950) - 968632..969894 (-) 1263 WP_007342456.1 NRAMP family divalent metal transporter -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 10956.82 Da        Isoelectric Point: 10.4474

>NTDB_id=470862 H3L91_RS04935 WP_007343959.1 965124..965450(+) (comE) [Neisseria bacilliformis strain DSM 23338]
MDLKKSLFGLLAYGVAAWVAAAVNINTATAEELKALPGIGQAKAQAIVDYRKENGAFKSVDDLKKVKGIGDGILGKLKDQ
ATVGGAANAKPVKPAVPTTAAPAAAVKK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=470862 H3L91_RS04935 WP_007343959.1 965124..965450(+) (comE) [Neisseria bacilliformis strain DSM 23338]
ATGGATTTGAAGAAATCTTTGTTCGGCCTTTTGGCTTACGGTGTGGCGGCCTGGGTGGCGGCTGCGGTGAATATCAATAC
GGCGACGGCCGAAGAGCTCAAAGCGCTGCCGGGTATCGGCCAGGCGAAGGCGCAGGCGATTGTGGACTACCGTAAGGAGA
ACGGCGCGTTCAAGTCGGTGGACGATTTGAAGAAGGTCAAGGGTATCGGCGACGGTATCCTGGGCAAGCTGAAAGACCAG
GCGACGGTCGGCGGTGCCGCCAATGCCAAACCGGTCAAACCGGCCGTGCCAACTACAGCCGCGCCCGCAGCAGCAGTGAA
AAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(22-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2BGU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.895

87.963

0.509
  comE Neisseria gonorrhoeae MS11

57.895

87.963

0.509
  comE Neisseria gonorrhoeae MS11

57.895

87.963

0.509
  comE Neisseria gonorrhoeae MS11

57.895

87.963

0.509
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.79

75

0.426