Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H3L91_RS04340 Genome accession   NZ_CP059571
Coordinates   847414..847740 (+) Length   108 a.a.
NCBI ID   WP_007343959.1    Uniprot ID   F2BGU8
Organism   Neisseria bacilliformis strain DSM 23338     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 842414..852740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L91_RS04340 (H3L91_04340) comE 847414..847740 (+) 327 WP_007343959.1 helix-hairpin-helix domain-containing protein Machinery gene
  H3L91_RS04345 (H3L91_04345) typA 848016..849827 (-) 1812 WP_182109883.1 translational GTPase TypA -
  H3L91_RS04350 (H3L91_04350) bfr 850210..850674 (+) 465 WP_007342329.1 bacterioferritin -
  H3L91_RS04355 (H3L91_04355) bfr 850699..851172 (+) 474 WP_007342330.1 bacterioferritin -
  H3L91_RS04360 (H3L91_04360) zupT 851437..852240 (-) 804 WP_007342331.1 zinc transporter ZupT -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 10956.82 Da        Isoelectric Point: 10.4474

>NTDB_id=470861 H3L91_RS04340 WP_007343959.1 847414..847740(+) (comE) [Neisseria bacilliformis strain DSM 23338]
MDLKKSLFGLLAYGVAAWVAAAVNINTATAEELKALPGIGQAKAQAIVDYRKENGAFKSVDDLKKVKGIGDGILGKLKDQ
ATVGGAANAKPVKPAVPTTAAPAAAVKK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=470861 H3L91_RS04340 WP_007343959.1 847414..847740(+) (comE) [Neisseria bacilliformis strain DSM 23338]
ATGGATTTGAAGAAATCTTTGTTCGGCCTTTTGGCTTACGGTGTGGCGGCCTGGGTGGCGGCTGCGGTGAATATCAATAC
GGCGACGGCCGAAGAGCTCAAAGCGCTGCCGGGTATCGGCCAGGCGAAGGCGCAGGCGATTGTGGACTACCGTAAGGAGA
ACGGCGCGTTCAAGTCGGTGGACGATTTGAAGAAGGTCAAGGGTATCGGCGACGGTATCCTGGGCAAGCTGAAAGACCAG
GCGACGGTCGGCGGTGCCGCCAATGCCAAACCGGTCAAACCGGCCGTGCCAACTACAGCCGCGCCCGCAGCAGCAGTGAA
AAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(22-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2BGU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.895

87.963

0.509
  comE Neisseria gonorrhoeae MS11

57.895

87.963

0.509
  comE Neisseria gonorrhoeae MS11

57.895

87.963

0.509
  comE Neisseria gonorrhoeae MS11

57.895

87.963

0.509
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.79

75

0.426