Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | H3L92_RS07915 | Genome accession | NZ_CP059570 |
| Coordinates | 1662698..1663162 (-) | Length | 154 a.a. |
| NCBI ID | WP_085366237.1 | Uniprot ID | A0A1X3D6X8 |
| Organism | Neisseria dentiae strain DSM 19151 | ||
| Function | DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1661917..1705644 | 1662698..1663162 | within | 0 |
Gene organization within MGE regions
Location: 1661917..1705644
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H3L92_RS07910 (H3L92_07910) | - | 1661958..1662275 (+) | 318 | WP_085366238.1 | DUF2322 family protein | - |
| H3L92_RS07915 (H3L92_07915) | comP | 1662698..1663162 (-) | 465 | WP_085366237.1 | type IV pilin protein | Machinery gene |
| H3L92_RS07920 (H3L92_07920) | - | 1663259..1663723 (-) | 465 | WP_085366236.1 | type IV pilin protein | - |
| H3L92_RS07925 (H3L92_07925) | - | 1664472..1665644 (+) | 1173 | WP_085366235.1 | efflux RND transporter periplasmic adaptor subunit | - |
| H3L92_RS07930 (H3L92_07930) | - | 1665657..1667594 (+) | 1938 | WP_085366234.1 | MacB family efflux pump subunit | - |
| H3L92_RS07935 (H3L92_07935) | - | 1667649..1669043 (+) | 1395 | WP_085366233.1 | TolC family protein | - |
| H3L92_RS07940 (H3L92_07940) | - | 1669523..1670431 (-) | 909 | WP_085366232.1 | Dyp-type peroxidase | - |
| H3L92_RS07945 (H3L92_07945) | - | 1670608..1671699 (+) | 1092 | WP_085366231.1 | metallophosphoesterase | - |
| H3L92_RS07950 (H3L92_07950) | trpS | 1671965..1672975 (-) | 1011 | WP_085366230.1 | tryptophan--tRNA ligase | - |
| H3L92_RS07955 (H3L92_07955) | clpB | 1673275..1675845 (+) | 2571 | WP_085366229.1 | ATP-dependent chaperone ClpB | - |
| H3L92_RS07960 (H3L92_07960) | - | 1676110..1676757 (-) | 648 | WP_085366228.1 | deoxynucleoside kinase | - |
| H3L92_RS07965 (H3L92_07965) | folK | 1676903..1677439 (-) | 537 | WP_085366227.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| H3L92_RS07970 (H3L92_07970) | - | 1677459..1677830 (-) | 372 | WP_085366226.1 | SirB2 family protein | - |
| H3L92_RS07975 (H3L92_07975) | der | 1678284..1679741 (-) | 1458 | WP_085367010.1 | ribosome biogenesis GTPase Der | - |
| H3L92_RS07980 (H3L92_07980) | - | 1679902..1680531 (-) | 630 | WP_085367009.1 | tetratricopeptide repeat protein | - |
| H3L92_RS07985 (H3L92_07985) | hisS | 1680532..1681827 (-) | 1296 | WP_085367008.1 | histidine--tRNA ligase | - |
| H3L92_RS07990 (H3L92_07990) | - | 1681866..1682264 (-) | 399 | WP_085367007.1 | hypothetical protein | - |
| H3L92_RS07995 (H3L92_07995) | ispG | 1682319..1683590 (-) | 1272 | WP_085367006.1 | flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | - |
| H3L92_RS08000 (H3L92_08000) | - | 1683587..1684489 (-) | 903 | WP_085367005.1 | helix-turn-helix domain-containing protein | - |
| H3L92_RS08005 (H3L92_08005) | pilW | 1684489..1685253 (-) | 765 | WP_085367004.1 | type IV pilus biogenesis/stability protein PilW | - |
| H3L92_RS08010 (H3L92_08010) | rlmN | 1685250..1686350 (-) | 1101 | WP_085367003.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| H3L92_RS08015 (H3L92_08015) | ndk | 1686483..1686908 (-) | 426 | WP_085367002.1 | nucleoside-diphosphate kinase | - |
| H3L92_RS08020 (H3L92_08020) | zapE | 1687025..1688176 (-) | 1152 | WP_085367001.1 | cell division protein ZapE | - |
| H3L92_RS08025 (H3L92_08025) | - | 1688295..1689101 (-) | 807 | WP_085367000.1 | DUF4198 domain-containing protein | - |
| H3L92_RS08030 (H3L92_08030) | - | 1689270..1689971 (+) | 702 | WP_158088180.1 | CPBP family intramembrane glutamic endopeptidase | - |
| H3L92_RS08035 (H3L92_08035) | - | 1690077..1691438 (-) | 1362 | WP_085366998.1 | PFL family protein | - |
| H3L92_RS08040 (H3L92_08040) | - | 1691451..1691723 (-) | 273 | WP_085366997.1 | ACT domain-containing protein | - |
| H3L92_RS08045 (H3L92_08045) | - | 1691964..1693238 (-) | 1275 | WP_085366996.1 | cell division protein ZipA C-terminal FtsZ-binding domain-containing protein | - |
| H3L92_RS08050 (H3L92_08050) | ampD | 1693318..1693866 (-) | 549 | WP_085366995.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| H3L92_RS08055 (H3L92_08055) | mltG | 1694004..1694999 (+) | 996 | WP_085367012.1 | endolytic transglycosylase MltG | - |
| H3L92_RS08060 (H3L92_08060) | tmk | 1695125..1695745 (+) | 621 | WP_085367011.1 | dTMP kinase | - |
| H3L92_RS08065 (H3L92_08065) | - | 1695826..1696725 (-) | 900 | WP_115336201.1 | IS3 family transposase | - |
| H3L92_RS08070 (H3L92_08070) | - | 1696623..1696976 (-) | 354 | WP_115336199.1 | helix-turn-helix domain-containing protein | - |
| H3L92_RS08075 (H3L92_08075) | - | 1697134..1697355 (+) | 222 | WP_085366965.1 | heavy-metal-associated domain-containing protein | - |
| H3L92_RS08080 (H3L92_08080) | - | 1697381..1699543 (+) | 2163 | WP_085366966.1 | cation-translocating P-type ATPase | - |
| H3L92_RS08085 (H3L92_08085) | recN | 1699732..1701393 (+) | 1662 | WP_085366967.1 | DNA repair protein RecN | - |
| H3L92_RS08090 (H3L92_08090) | - | 1701705..1702061 (-) | 357 | WP_085366968.1 | RidA family protein | - |
| H3L92_RS08095 (H3L92_08095) | - | 1702202..1702681 (+) | 480 | WP_085366969.1 | aminoacyl-tRNA deacylase | - |
| H3L92_RS08100 (H3L92_08100) | clpX | 1703019..1704275 (-) | 1257 | WP_085366970.1 | ATP-dependent Clp protease ATP-binding subunit ClpX | - |
| H3L92_RS08105 (H3L92_08105) | - | 1704651..1705586 (+) | 936 | WP_085366971.1 | serine hydrolase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16906.36 Da Isoelectric Point: 9.6544
>NTDB_id=470831 H3L92_RS07915 WP_085366237.1 1662698..1663162(-) (comP) [Neisseria dentiae strain DSM 19151]
MQNACRQGFTLLELLAAIAISAVLAVIAVPAYQKYVLDTRLNHARTVLLQNAHFMERFYQQHRSFKQTSTTWPALPHTAT
GHFCIRPQGNARGAHDGKFTLKAVAFDKNSEARIIKINESLTAVVCESSASTCADSGSFFAGGSTVDKKCRVFQ
MQNACRQGFTLLELLAAIAISAVLAVIAVPAYQKYVLDTRLNHARTVLLQNAHFMERFYQQHRSFKQTSTTWPALPHTAT
GHFCIRPQGNARGAHDGKFTLKAVAFDKNSEARIIKINESLTAVVCESSASTCADSGSFFAGGSTVDKKCRVFQ
Nucleotide
Download Length: 465 bp
>NTDB_id=470831 H3L92_RS07915 WP_085366237.1 1662698..1663162(-) (comP) [Neisseria dentiae strain DSM 19151]
ATGCAAAATGCCTGCCGACAAGGCTTCACATTACTTGAACTGCTTGCTGCCATAGCCATATCGGCTGTTTTGGCCGTGAT
TGCGGTTCCCGCTTATCAAAAATATGTCCTCGACACCCGTTTGAACCATGCCCGAACGGTGCTGCTGCAAAACGCCCATT
TTATGGAACGTTTTTACCAGCAGCACCGCTCGTTCAAACAGACTTCCACCACTTGGCCTGCGCTGCCGCATACGGCAACC
GGTCATTTCTGTATCCGCCCTCAAGGGAACGCCCGCGGTGCGCATGACGGCAAATTTACCCTGAAAGCCGTTGCATTCGA
TAAAAACAGCGAAGCGCGCATTATTAAGATCAACGAATCGTTAACTGCCGTGGTGTGCGAGAGCAGTGCCAGCACTTGTG
CGGACAGTGGAAGCTTTTTTGCCGGTGGGAGCACGGTGGATAAAAAGTGTAGGGTATTCCAATAA
ATGCAAAATGCCTGCCGACAAGGCTTCACATTACTTGAACTGCTTGCTGCCATAGCCATATCGGCTGTTTTGGCCGTGAT
TGCGGTTCCCGCTTATCAAAAATATGTCCTCGACACCCGTTTGAACCATGCCCGAACGGTGCTGCTGCAAAACGCCCATT
TTATGGAACGTTTTTACCAGCAGCACCGCTCGTTCAAACAGACTTCCACCACTTGGCCTGCGCTGCCGCATACGGCAACC
GGTCATTTCTGTATCCGCCCTCAAGGGAACGCCCGCGGTGCGCATGACGGCAAATTTACCCTGAAAGCCGTTGCATTCGA
TAAAAACAGCGAAGCGCGCATTATTAAGATCAACGAATCGTTAACTGCCGTGGTGTGCGAGAGCAGTGCCAGCACTTGTG
CGGACAGTGGAAGCTTTTTTGCCGGTGGGAGCACGGTGGATAAAAAGTGTAGGGTATTCCAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Neisseria meningitidis 8013 |
50.676 |
96.104 |
0.487 |
| comP | Neisseria gonorrhoeae MS11 |
50 |
96.104 |
0.481 |
| comP | Neisseria subflava NJ9703 |
44.667 |
97.403 |
0.435 |