Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   H3L95_RS10460 Genome accession   NZ_CP059566
Coordinates   2191619..2192071 (-) Length   150 a.a.
NCBI ID   WP_003755655.1    Uniprot ID   C6M1E9
Organism   Neisseria sicca strain DSM 17713     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2186619..2197071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS10420 (H3L95_10420) - 2186706..2187620 (+) 915 WP_003755634.1 patatin-like phospholipase family protein -
  H3L95_RS10425 (H3L95_10425) - 2187871..2188212 (+) 342 WP_040667920.1 hypothetical protein -
  H3L95_RS10430 (H3L95_10430) - 2188235..2188354 (+) 120 Protein_2035 IS5/IS1182 family transposase -
  H3L95_RS10435 (H3L95_10435) luxS 2188432..2188938 (-) 507 WP_003755643.1 S-ribosylhomocysteine lyase -
  H3L95_RS10440 (H3L95_10440) - 2189102..2189560 (-) 459 WP_003755647.1 DUF6636 domain-containing protein -
  H3L95_RS10445 (H3L95_10445) cyaY 2189618..2189941 (-) 324 WP_003755648.1 iron donor protein CyaY -
  H3L95_RS10450 (H3L95_10450) - 2190012..2190182 (+) 171 WP_003755649.1 lipoprotein -
  H3L95_RS10455 (H3L95_10455) lysA 2190194..2191414 (+) 1221 WP_003755651.1 diaminopimelate decarboxylase -
  H3L95_RS10460 (H3L95_10460) comP 2191619..2192071 (-) 453 WP_003755655.1 type IV pilin protein Machinery gene
  H3L95_RS14245 - 2192088..2192195 (+) 108 Protein_2042 IS5/IS1182 family transposase -
  H3L95_RS10465 (H3L95_10465) - 2192481..2192576 (-) 96 Protein_2043 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  H3L95_RS10475 (H3L95_10475) - 2193133..2193702 (+) 570 WP_003755661.1 hypothetical protein -
  H3L95_RS10480 (H3L95_10480) groL 2193816..2195450 (-) 1635 WP_045074096.1 chaperonin GroEL -
  H3L95_RS10485 (H3L95_10485) groES 2195556..2195843 (-) 288 WP_003755668.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16996.43 Da        Isoelectric Point: 8.1073

>NTDB_id=470745 H3L95_RS10460 WP_003755655.1 2191619..2192071(-) (comP) [Neisseria sicca strain DSM 17713]
MKEIQRGFSLSQLVFTIMMVGILTSIAYPSYQKYVENTKLQEVRAAMLENAQFLERFYQKNGSFKQSSTQWPDLPIKEIG
DFCIKVQGDAKGTPDGRFTLKAVARSDKNPKVLKINESFVTVSCETTESTCEDKAQHFANTDKSCKIFES

Nucleotide


Download         Length: 453 bp        

>NTDB_id=470745 H3L95_RS10460 WP_003755655.1 2191619..2192071(-) (comP) [Neisseria sicca strain DSM 17713]
ATGAAGGAAATTCAGCGGGGATTTTCTTTGTCTCAACTGGTTTTTACCATCATGATGGTGGGGATTTTAACGTCGATTGC
CTACCCGTCTTACCAAAAATATGTTGAAAATACCAAGCTGCAGGAAGTGCGGGCAGCCATGCTGGAAAACGCCCAATTTC
TGGAGCGTTTTTATCAAAAAAACGGAAGTTTCAAACAAAGTTCCACCCAATGGCCGGATTTGCCGATTAAGGAAATCGGC
GATTTTTGCATCAAGGTGCAAGGCGACGCCAAAGGCACGCCGGACGGGCGGTTTACCCTGAAGGCAGTAGCGCGGTCGGA
TAAAAATCCCAAGGTATTGAAAATCAACGAAAGCTTTGTCACAGTATCGTGTGAAACGACCGAAAGCACCTGCGAAGACA
AGGCGCAGCATTTCGCCAATACGGACAAATCATGCAAGATATTTGAGTCTTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6M1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria meningitidis 8013

50

97.333

0.487
  comP Neisseria gonorrhoeae MS11

49.315

97.333

0.48
  comP Neisseria subflava NJ9703

45.27

98.667

0.447