Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   H3L95_RS10355 Genome accession   NZ_CP059566
Coordinates   2176496..2176948 (+) Length   150 a.a.
NCBI ID   WP_003755655.1    Uniprot ID   C6M1E9
Organism   Neisseria sicca strain DSM 17713     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2171496..2181948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS10325 (H3L95_10325) - 2171757..2172695 (-) 939 WP_003760971.1 ABC transporter ATP-binding protein -
  H3L95_RS10330 (H3L95_10330) - 2172778..2173656 (-) 879 WP_003760967.1 NUDIX hydrolase family protein -
  H3L95_RS10335 (H3L95_10335) - 2173804..2174400 (+) 597 WP_003760965.1 carbonic anhydrase -
  H3L95_RS10340 (H3L95_10340) nadD 2174458..2175069 (+) 612 WP_003760961.1 nicotinate-nucleotide adenylyltransferase -
  H3L95_RS10345 (H3L95_10345) rsfS 2175137..2175523 (+) 387 WP_003760959.1 ribosome silencing factor -
  H3L95_RS10350 (H3L95_10350) rlmH 2175721..2176191 (+) 471 WP_003760957.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  H3L95_RS10355 (H3L95_10355) comP 2176496..2176948 (+) 453 WP_003755655.1 type IV pilin protein Machinery gene
  H3L95_RS10360 (H3L95_10360) - 2177735..2178247 (-) 513 WP_040667916.1 DUF4189 domain-containing protein -
  H3L95_RS10365 (H3L95_10365) - 2178273..2178785 (-) 513 WP_003755611.1 DUF4189 domain-containing protein -
  H3L95_RS10370 (H3L95_10370) - 2179041..2179211 (+) 171 WP_164907877.1 hypothetical protein -
  H3L95_RS10375 (H3L95_10375) glmU 2179310..2180683 (-) 1374 WP_003755615.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  H3L95_RS10380 (H3L95_10380) - 2180796..2180987 (-) 192 WP_040667918.1 hypothetical protein -
  H3L95_RS10385 (H3L95_10385) - 2181096..2181386 (-) 291 WP_003755616.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16996.43 Da        Isoelectric Point: 8.1073

>NTDB_id=470743 H3L95_RS10355 WP_003755655.1 2176496..2176948(+) (comP) [Neisseria sicca strain DSM 17713]
MKEIQRGFSLSQLVFTIMMVGILTSIAYPSYQKYVENTKLQEVRAAMLENAQFLERFYQKNGSFKQSSTQWPDLPIKEIG
DFCIKVQGDAKGTPDGRFTLKAVARSDKNPKVLKINESFVTVSCETTESTCEDKAQHFANTDKSCKIFES

Nucleotide


Download         Length: 453 bp        

>NTDB_id=470743 H3L95_RS10355 WP_003755655.1 2176496..2176948(+) (comP) [Neisseria sicca strain DSM 17713]
ATGAAGGAAATTCAGCGGGGATTTTCTTTGTCTCAACTGGTTTTTACCATCATGATGGTGGGGATTTTAACGTCGATTGC
CTACCCGTCTTACCAAAAATATGTTGAAAATACCAAGCTGCAGGAAGTGCGGGCAGCCATGCTGGAAAACGCCCAATTTC
TGGAGCGTTTTTATCAAAAAAACGGAAGTTTCAAACAAAGTTCCACCCAATGGCCGGATTTGCCGATTAAGGAAATCGGC
GATTTTTGCATCAAGGTGCAAGGCGACGCCAAAGGCACGCCGGACGGGCGGTTTACCCTGAAGGCAGTAGCGCGGTCGGA
TAAAAATCCCAAGGTATTGAAAATCAACGAAAGCTTTGTCACAGTATCGTGTGAAACGACCGAAAGCACCTGCGAAGACA
AGGCGCAACATTTCGCCAATACGGACAAATCATGCAAGATATTTGAGTCTTGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6M1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria meningitidis 8013

50

97.333

0.487
  comP Neisseria gonorrhoeae MS11

49.315

97.333

0.48
  comP Neisseria subflava NJ9703

45.27

98.667

0.447