Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   H3L95_RS08930 Genome accession   NZ_CP059566
Coordinates   1855535..1856152 (-) Length   205 a.a.
NCBI ID   WP_003759517.1    Uniprot ID   I2NS91
Organism   Neisseria sicca strain DSM 17713     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1850535..1861152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS08910 (H3L95_08910) - 1851366..1851878 (-) 513 WP_003765896.1 shikimate kinase -
  H3L95_RS08915 (H3L95_08915) pilQ 1852105..1854240 (-) 2136 WP_003759524.1 type IV pilus secretin PilQ Machinery gene
  H3L95_RS08920 (H3L95_08920) pilP 1854258..1854824 (-) 567 WP_003765902.1 pilus assembly protein PilP Machinery gene
  H3L95_RS08925 (H3L95_08925) - 1854842..1855534 (-) 693 WP_003759520.1 type 4a pilus biogenesis protein PilO -
  H3L95_RS08930 (H3L95_08930) pilN 1855535..1856152 (-) 618 WP_003759517.1 PilN domain-containing protein Machinery gene
  H3L95_RS08935 (H3L95_08935) pilM 1856154..1857263 (-) 1110 WP_003759516.1 type IV pilus assembly protein PilM -
  H3L95_RS08940 (H3L95_08940) - 1857414..1859819 (+) 2406 WP_182096138.1 penicillin-binding protein 1A -
  H3L95_RS08950 (H3L95_08950) yihA 1860384..1861037 (-) 654 WP_003759508.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23114.65 Da        Isoelectric Point: 9.4525

>NTDB_id=470739 H3L95_RS08930 WP_003759517.1 1855535..1856152(-) (pilN) [Neisseria sicca strain DSM 17713]
MIEFVKINLLPYREEIKQRKKQQFKVLMLSALLIGAGLLVLTYLTINNAISRQEDRNALLGKEIEKLDKALGEILKLQQE
KENFLSKKQKVEELQEKRSQAAYIIDSLNVVTPDNSYLTALEAESSTSYKITGRASSDNKIAMFMRSLPSTGVFAQPELL
SIKKIDNYQEFTLKVLLNNSGHPSVPVQNPAANTTETGEQKQEVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=470739 H3L95_RS08930 WP_003759517.1 1855535..1856152(-) (pilN) [Neisseria sicca strain DSM 17713]
ATGATCGAATTTGTTAAAATTAACCTTCTTCCTTATAGGGAAGAAATCAAACAGCGCAAAAAGCAACAATTTAAAGTATT
AATGCTTTCGGCGTTATTGATAGGTGCAGGTCTGCTTGTGTTGACATATTTGACAATTAATAATGCAATCAGCAGGCAGG
AAGACCGTAATGCCCTTCTAGGGAAGGAAATTGAAAAGCTGGATAAAGCTTTGGGAGAAATTCTAAAACTGCAGCAAGAA
AAAGAAAATTTCCTATCAAAAAAACAAAAAGTAGAAGAGTTACAGGAAAAACGTTCACAGGCTGCCTATATTATCGACAG
CTTAAATGTAGTCACTCCCGATAACTCTTATCTGACAGCGTTGGAAGCAGAAAGTTCGACATCTTACAAAATTACGGGTC
GAGCAAGTAGTGATAATAAGATCGCAATGTTTATGCGTTCTTTACCAAGTACCGGGGTTTTTGCTCAGCCAGAACTTTTG
AGTATTAAGAAAATTGATAATTATCAAGAATTTACTCTGAAGGTTTTGTTGAATAATTCAGGTCATCCATCAGTACCCGT
ACAAAATCCAGCCGCGAACACGACTGAAACTGGCGAACAGAAGCAAGAGGTAAAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(105-175)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2NS91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

53.125

93.659

0.498