Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   H3L95_RS08920 Genome accession   NZ_CP059566
Coordinates   1854258..1854824 (-) Length   188 a.a.
NCBI ID   WP_003765902.1    Uniprot ID   I2NSA2
Organism   Neisseria sicca strain DSM 17713     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1849258..1859824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L95_RS08905 (H3L95_08905) aroB 1850201..1851280 (-) 1080 WP_003759527.1 3-dehydroquinate synthase -
  H3L95_RS08910 (H3L95_08910) - 1851366..1851878 (-) 513 WP_003765896.1 shikimate kinase -
  H3L95_RS08915 (H3L95_08915) pilQ 1852105..1854240 (-) 2136 WP_003759524.1 type IV pilus secretin PilQ Machinery gene
  H3L95_RS08920 (H3L95_08920) pilP 1854258..1854824 (-) 567 WP_003765902.1 pilus assembly protein PilP Machinery gene
  H3L95_RS08925 (H3L95_08925) - 1854842..1855534 (-) 693 WP_003759520.1 type 4a pilus biogenesis protein PilO -
  H3L95_RS08930 (H3L95_08930) pilN 1855535..1856152 (-) 618 WP_003759517.1 PilN domain-containing protein Machinery gene
  H3L95_RS08935 (H3L95_08935) pilM 1856154..1857263 (-) 1110 WP_003759516.1 type IV pilus assembly protein PilM -
  H3L95_RS08940 (H3L95_08940) - 1857414..1859819 (+) 2406 WP_182096138.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20626.11 Da        Isoelectric Point: 5.2663

>NTDB_id=470738 H3L95_RS08920 WP_003765902.1 1854258..1854824(-) (pilP) [Neisseria sicca strain DSM 17713]
MKNTILLVGVLSLAACSPTHDDLNMWIKQTQDEAKVKVTPFQAPTITPPVAYTPPAYNGLNAFDYRRLENAPKGNNAPNL
NRQKETLEAFSLENMRYVGILRGNNKTSGFIDVNGHVYTVMPGNYIGQNYGKIQTITEDKITLTELIEDSSGNWIYRKAE
LPLSTQSDEGSSGASTAESRSESAAIPN

Nucleotide


Download         Length: 567 bp        

>NTDB_id=470738 H3L95_RS08920 WP_003765902.1 1854258..1854824(-) (pilP) [Neisseria sicca strain DSM 17713]
ATGAAAAATACTATCTTACTCGTAGGTGTTTTGTCTTTAGCAGCATGTTCCCCCACTCATGATGATTTAAATATGTGGAT
AAAACAGACGCAAGATGAAGCTAAAGTTAAGGTTACTCCATTTCAAGCACCGACGATTACTCCGCCAGTTGCATATACTC
CTCCAGCATATAATGGGTTGAATGCGTTTGACTATCGACGTTTGGAAAATGCACCCAAGGGGAATAATGCTCCTAATTTG
AATCGTCAGAAAGAGACATTGGAAGCATTTAGTTTGGAAAATATGCGTTATGTCGGTATTCTGCGTGGTAATAACAAGAC
ATCTGGCTTTATCGATGTAAATGGACATGTTTATACCGTTATGCCGGGCAACTATATCGGTCAAAATTACGGTAAAATCC
AAACGATTACTGAGGATAAAATTACTTTGACTGAATTAATAGAAGACAGTTCTGGTAACTGGATATATCGAAAGGCTGAA
TTGCCGTTAAGTACACAGTCAGATGAAGGTTCAAGTGGTGCTTCGACAGCTGAATCTCGAAGCGAATCTGCCGCAATTCC
AAATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2NSA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

58.788

87.766

0.516