Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H3L96_RS11290 Genome accession   NZ_CP059565
Coordinates   2367385..2367681 (-) Length   98 a.a.
NCBI ID   WP_009117675.1    Uniprot ID   G4CTX5
Organism   Neisseria wadsworthii strain DSM 22245     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2362385..2372681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L96_RS11255 (H3L96_11245) panC 2362650..2363483 (-) 834 WP_009117077.1 pantoate--beta-alanine ligase -
  H3L96_RS11260 (H3L96_11250) panB 2363500..2364294 (-) 795 WP_040667603.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  H3L96_RS11265 (H3L96_11255) - 2364425..2364691 (-) 267 WP_009117079.1 hypothetical protein -
  H3L96_RS11270 (H3L96_11260) - 2364709..2365101 (-) 393 WP_009117080.1 phage holin family protein -
  H3L96_RS11275 (H3L96_11265) - 2365167..2365478 (-) 312 WP_009117081.1 DUF883 family protein -
  H3L96_RS11280 (H3L96_11270) - 2365618..2366106 (-) 489 WP_009117082.1 hypothetical protein -
  H3L96_RS11285 (H3L96_11275) - 2366103..2366690 (-) 588 WP_009117083.1 hypothetical protein -
  H3L96_RS11290 (H3L96_11280) comE 2367385..2367681 (-) 297 WP_009117675.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10090.95 Da        Isoelectric Point: 10.5335

>NTDB_id=470718 H3L96_RS11290 WP_009117675.1 2367385..2367681(-) (comE) [Neisseria wadsworthii strain DSM 22245]
MKKLMLGALAALSCAWSLAAVNINTATAEELKALPGIGPAKAAAIVEYRQANGAFKSVEELKKVKGIGDGIFNKLKEEAT
VSGAAKAKAAKPLQPKAK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=470718 H3L96_RS11290 WP_009117675.1 2367385..2367681(-) (comE) [Neisseria wadsworthii strain DSM 22245]
ATGAAAAAACTGATGTTAGGTGCGTTGGCGGCGTTGTCGTGTGCGTGGTCGTTGGCGGCGGTGAATATCAATACGGCGAC
GGCGGAGGAATTGAAGGCGCTGCCGGGTATCGGCCCGGCGAAGGCGGCGGCGATAGTGGAGTACCGTCAGGCCAACGGTG
CCTTTAAAAGTGTGGAGGAGTTGAAGAAGGTGAAGGGTATCGGCGACGGTATCTTCAACAAACTGAAGGAAGAGGCGACG
GTATCGGGTGCGGCGAAGGCCAAAGCGGCCAAACCGCTGCAGCCTAAGGCTAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4CTX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.098

83.673

0.469