Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   H3L96_RS07435 Genome accession   NZ_CP059565
Coordinates   1560045..1560515 (-) Length   156 a.a.
NCBI ID   WP_009116267.1    Uniprot ID   G4CPW6
Organism   Neisseria wadsworthii strain DSM 22245     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555045..1565515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L96_RS07410 (H3L96_07400) rpoZ 1555762..1555968 (-) 207 WP_182073143.1 DNA-directed RNA polymerase subunit omega -
  H3L96_RS07415 (H3L96_07405) gmk 1556036..1556653 (-) 618 WP_009116261.1 guanylate kinase -
  H3L96_RS07420 (H3L96_07410) - 1556777..1557337 (+) 561 WP_040667469.1 adenine phosphoribosyltransferase -
  H3L96_RS07425 (H3L96_07415) - 1557425..1558369 (-) 945 WP_009116264.1 serine hydrolase -
  H3L96_RS07430 (H3L96_07420) clpX 1558706..1559983 (+) 1278 WP_040666942.1 ATP-dependent Clp protease ATP-binding subunit ClpX -
  H3L96_RS07435 (H3L96_07425) comP 1560045..1560515 (-) 471 WP_009116267.1 type IV pilin protein Machinery gene
  H3L96_RS07440 (H3L96_07430) - 1560593..1561024 (-) 432 WP_009116268.1 type IV pilin protein -
  H3L96_RS07445 (H3L96_07435) - 1561389..1562567 (+) 1179 WP_009116269.1 efflux RND transporter periplasmic adaptor subunit -
  H3L96_RS07450 (H3L96_07440) - 1562586..1564526 (+) 1941 WP_009116270.1 MacB family efflux pump subunit -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17649.02 Da        Isoelectric Point: 8.1403

>NTDB_id=470703 H3L96_RS07435 WP_009116267.1 1560045..1560515(-) (comP) [Neisseria wadsworthii strain DSM 22245]
MHNNYSLNSGFTLVEMLIAITVFSILALIAYPTYSNYVRDARIAEVQGALIENAHFMEKFYLQHHSFKRNSTTWPTLPIT
ANNHFCIKPQGNARGANTDRFTLKAVAFNKSAEPRVIKINEAQQIIICESSKSTCDDNDNFFSGANSTDKQCRMVY

Nucleotide


Download         Length: 471 bp        

>NTDB_id=470703 H3L96_RS07435 WP_009116267.1 1560045..1560515(-) (comP) [Neisseria wadsworthii strain DSM 22245]
ATGCATAACAATTATTCACTCAACAGCGGATTTACGCTTGTCGAGATGCTGATTGCCATCACAGTATTCAGCATACTCGC
CCTAATTGCCTACCCTACTTACAGCAATTACGTTCGCGACGCCAGAATCGCCGAAGTGCAGGGCGCTTTAATTGAAAACG
CCCATTTTATGGAAAAATTCTATCTGCAACACCACTCGTTCAAACGAAACTCCACCACTTGGCCCACACTTCCCATTACT
GCCAATAACCATTTCTGTATCAAACCTCAAGGCAATGCCCGCGGCGCAAATACCGATCGGTTTACATTAAAAGCCGTTGC
TTTTAACAAAAGCGCAGAGCCGCGTGTTATTAAAATCAACGAAGCCCAGCAAATTATCATTTGCGAATCCAGCAAAAGCA
CATGCGATGACAACGATAATTTCTTCTCAGGTGCCAACAGCACTGACAAACAGTGCAGAATGGTGTATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4CPW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

50.676

94.872

0.481
  comP Neisseria meningitidis 8013

51.02

94.231

0.481
  comP Neisseria subflava NJ9703

39.216

98.077

0.385