Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   H3L96_RS02930 Genome accession   NZ_CP059565
Coordinates   612891..613187 (-) Length   98 a.a.
NCBI ID   WP_009117675.1    Uniprot ID   G4CTX5
Organism   Neisseria wadsworthii strain DSM 22245     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 607891..618187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H3L96_RS02910 (H3L96_02900) - 608647..609210 (-) 564 WP_009115292.1 L-threonylcarbamoyladenylate synthase -
  H3L96_RS02915 (H3L96_02905) - 609344..609775 (-) 432 WP_009115293.1 EamA family transporter -
  H3L96_RS02920 (H3L96_02910) - 609863..611539 (+) 1677 WP_009115294.1 formate--tetrahydrofolate ligase -
  H3L96_RS02925 (H3L96_02915) - 611639..612565 (-) 927 WP_009115295.1 immunity 49 family protein -
  H3L96_RS02930 (H3L96_02920) comE 612891..613187 (-) 297 WP_009117675.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10090.95 Da        Isoelectric Point: 10.5335

>NTDB_id=470696 H3L96_RS02930 WP_009117675.1 612891..613187(-) (comE) [Neisseria wadsworthii strain DSM 22245]
MKKLMLGALAALSCAWSLAAVNINTATAEELKALPGIGPAKAAAIVEYRQANGAFKSVEELKKVKGIGDGIFNKLKEEAT
VSGAAKAKAAKPLQPKAK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=470696 H3L96_RS02930 WP_009117675.1 612891..613187(-) (comE) [Neisseria wadsworthii strain DSM 22245]
ATGAAAAAACTGATGTTAGGTGCGTTGGCGGCGTTGTCGTGTGCGTGGTCGTTGGCGGCGGTGAATATCAATACGGCGAC
GGCGGAGGAATTGAAGGCGCTGCCGGGTATCGGCCCGGCGAAGGCGGCGGCGATAGTGGAGTACCGTCAGGCCAACGGTG
CCTTTAAAAGTGTGGAGGAGTTGAAGAAGGTGAAGGGTATCGGCGACGGTATCTTCAACAAACTGAAGGAAGAGGCGACG
GTATCGGGTGCGGCGAAGGCCAAAGCGGCCAAACCGCTGCAGCCTAAGGCTAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4CTX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  comE Neisseria gonorrhoeae MS11

58.163

100

0.582
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.098

83.673

0.469