Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H2677_RS14455 Genome accession   NZ_CP059558
Coordinates   3119628..3121058 (+) Length   476 a.a.
NCBI ID   WP_004917021.1    Uniprot ID   -
Organism   Acinetobacter junii strain YR7     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3114628..3126058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS14430 (H2677_14425) - 3114890..3115669 (-) 780 WP_212638809.1 hypothetical protein -
  H2677_RS14435 (H2677_14430) - 3115693..3116028 (-) 336 Protein_2811 hypothetical protein -
  H2677_RS14440 (H2677_14435) pbpG 3116116..3117177 (-) 1062 WP_125297253.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  H2677_RS14445 (H2677_14440) - 3117389..3118024 (+) 636 WP_004957336.1 response regulator -
  H2677_RS14450 (H2677_14445) pilS 3118040..3119605 (+) 1566 WP_212638810.1 PAS domain-containing sensor histidine kinase Regulator
  H2677_RS14455 (H2677_14450) pilR 3119628..3121058 (+) 1431 WP_004917021.1 sigma-54 dependent transcriptional regulator Regulator
  H2677_RS14460 (H2677_14455) - 3121097..3122272 (-) 1176 WP_212638811.1 S41 family peptidase -
  H2677_RS14465 (H2677_14460) gpmI 3122282..3123826 (-) 1545 WP_004957318.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  H2677_RS14470 (H2677_14465) lptG 3123946..3125016 (-) 1071 WP_005403525.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53458.42 Da        Isoelectric Point: 6.1504

>NTDB_id=470608 H2677_RS14455 WP_004917021.1 3119628..3121058(+) (pilR) [Acinetobacter junii strain YR7]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAVETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILI
LANHFIQKISQEWELPVKSLTTRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSSISIPSNAYVQS
DESEITLQSASPNPSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=470608 H2677_RS14455 WP_004917021.1 3119628..3121058(+) (pilR) [Acinetobacter junii strain YR7]
ATGGCAACTAAACAACCTCTCGTCTTACTCGTAGACGATGAAGAAGACTTGTGTCTTCTTATGCAAATGACGCTCGCACG
TATGGGAATCAAAACTCATCTTGCATATCGTGTGGAGCAAGCCAAAAAATTCTTTACCGAGTTTCAGTACGATGCATGTC
TAACCGATCTTAATCTTCCAGATGGAAATGGTCTTGATCTCGTTAAACATGTGACTCAAAACTATCCAAACACACCCATC
GCTGTTCTTACTGCTTACGGAAATATGGACATTGCAATTGCAGCACTGAAAGCTGGAGCGTTTGACTTTGTTAGCAAACC
AGTGAATCAGACACATCTTGATCAACTGATTCAAAAAGCTTTAAACCGCCCTCAACCAGAACAAGAGGCGGTAGAAACAG
CCTTAGAAAACAAATTGTTGATTGGGCGTTCAGCACCTATTCAGCAATTACGGATCGCTTTAAAAAAGATTGCCCGTTCA
CAAGCACCTGTTTTTATTACAGGTGAATCAGGAACAGGAAAAGAGGTCGTTGCGAACTTAGTGCATCGTTTAAGTAATCG
CAGCGAAGGACCTTTCATTGCCATCAACTGTGGTGCTATTCCAACAGAATTAATGGAAAGCGAATTATTCGGTCATAAGA
AAGGCAGTTTTACAGGTGCAACACAGGATAAACAAGGACTTATCTTATCTGCACACGGTGGCAGCCTTTTTTTAGATGAA
ATCGCAGAACTTCCCTTAAACATGCAAGTAAAACTTTTACGTGCAGTACAAGAGAAAAAAATTCGCCCTGTTGGCTCAGA
TCAAGAAATTGATGTGGATTTCCGTGTGATTAGTGCCAGCCACCAAGATTTAGAACTTTTGGTTCAGCAAGGTCGCTTTA
GACAAGATTTATTCTTTCGCATTCATGTGATGGATATCGTATTGCCCCCACTTCGTGAGCGCGGTCAAGATATCTTAATT
CTGGCGAATCATTTTATTCAAAAGATTAGCCAAGAATGGGAGTTACCTGTTAAATCCCTCACCACACGTGCAGAGCAATT
CCTCTTGCAGCAATATTTTCCAGGTAACGTTCGCGAACTTCGAAACATTATTGAACGTGCAATCACTCTCAGTGATGATG
AAACCATTGATTTGGCTCATTTGCAAACTGCACCTCTGCGTAGCTCAATCAGTATTCCTTCAAATGCTTATGTTCAGTCA
GATGAAAGTGAAATAACGCTGCAAAGTGCGAGTCCAAACCCAAGCTCTAAAAAATTACCGCCAGAAGGTTTGGAGCGCTA
TTTAGAAAATATTGAAAAAGAAGTGTTATTGAATGCTTTAAATCTGACCCACTGGAATCGAACGCTAGCAGCAAAAAAAC
TTGGAATGACCTTCCGATCTTTACGCTATCGTTTGAAAAAGTTTGGTTTAGATACTGAGGATGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.034

100

0.84
  pilR Pseudomonas aeruginosa PAK

50.216

97.479

0.49