Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   H2677_RS12415 Genome accession   NZ_CP059558
Coordinates   2695312..2695695 (-) Length   127 a.a.
NCBI ID   WP_004640629.1    Uniprot ID   -
Organism   Acinetobacter junii strain YR7     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2690312..2700695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS12400 (H2677_12395) - 2692220..2694307 (-) 2088 WP_004950560.1 methyl-accepting chemotaxis protein -
  H2677_RS12405 (H2677_12400) - 2694354..2694890 (-) 537 WP_004908738.1 chemotaxis protein CheW -
  H2677_RS12410 (H2677_12405) - 2694929..2695291 (-) 363 WP_004664659.1 PleD family two-component system response regulator -
  H2677_RS12415 (H2677_12410) pilG 2695312..2695695 (-) 384 WP_004640629.1 twitching motility response regulator PilG Regulator
  H2677_RS12420 (H2677_12415) - 2695975..2696643 (+) 669 WP_212638664.1 hypothetical protein -
  H2677_RS12425 (H2677_12420) - 2696802..2698517 (+) 1716 WP_194598144.1 proline--tRNA ligase -
  H2677_RS12430 (H2677_12425) - 2698577..2698912 (-) 336 WP_042893173.1 YegP family protein -
  H2677_RS12435 (H2677_12430) - 2699054..2699398 (-) 345 WP_004908748.1 zinc ribbon domain-containing protein YjdM -
  H2677_RS12440 (H2677_12435) - 2699481..2699831 (-) 351 WP_004908749.1 DUF488 domain-containing protein -
  H2677_RS12445 (H2677_12440) - 2699856..2700191 (-) 336 WP_212638665.1 DUF2004 domain-containing protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14199.33 Da        Isoelectric Point: 4.7278

>NTDB_id=470597 H2677_RS12415 WP_004640629.1 2695312..2695695(-) (pilG) [Acinetobacter junii strain YR7]
MEDKFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSLNYQ
NIPVIMLSSKDGLFDQAKGRVVGSDEYLTKPFSKDELLSAIRNHVSA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=470597 H2677_RS12415 WP_004640629.1 2695312..2695695(-) (pilG) [Acinetobacter junii strain YR7]
ATGGAAGATAAATTTCAAAATTTAAAAGTAATGGTGATTGACGATTCTAAAACGATTCGACGTACAGCTGAGACACTGTT
ACAACGCGAAGGTTGTGAGGTGATTACAGCTGTCGATGGTTTTGAAGCATTATCGAAAATTGCGGAAGCAAATCCTGATA
TCGTATTTGTCGATATTATGATGCCTCGTCTAGATGGTTACCAAACCTGTGCATTAATTAAAAACTCTCTAAATTATCAA
AATATTCCAGTAATCATGTTATCAAGCAAAGATGGTTTGTTTGATCAAGCCAAAGGGCGTGTTGTGGGGTCAGATGAATA
TTTAACTAAGCCATTTAGTAAAGATGAGCTGTTAAGTGCGATTCGTAACCACGTAAGCGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

96.85

100

0.969
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.228

89.764

0.37