Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   H2677_RS06585 Genome accession   NZ_CP059558
Coordinates   1385285..1385992 (-) Length   235 a.a.
NCBI ID   WP_004915082.1    Uniprot ID   A0A8I0S549
Organism   Acinetobacter junii strain YR7     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1380285..1390992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2677_RS06570 (H2677_06570) - 1380938..1382512 (+) 1575 WP_212639431.1 urea amidolyase family protein -
  H2677_RS06575 (H2677_06575) - 1382513..1384249 (+) 1737 WP_212639432.1 biotin carboxylase N-terminal domain-containing protein -
  H2677_RS06580 (H2677_06580) - 1384302..1385081 (-) 780 WP_004915079.1 M48 family metallopeptidase -
  H2677_RS06585 (H2677_06585) crp 1385285..1385992 (-) 708 WP_004915082.1 cAMP-activated global transcriptional regulator CRP Regulator
  H2677_RS06590 (H2677_06590) - 1386140..1386568 (+) 429 WP_004953612.1 OsmC family protein -
  H2677_RS06595 (H2677_06595) - 1386614..1387414 (-) 801 WP_212639433.1 M23 family metallopeptidase -
  H2677_RS06600 (H2677_06600) clpB 1387676..1390255 (+) 2580 WP_168153760.1 ATP-dependent chaperone ClpB -
  H2677_RS06605 (H2677_06605) - 1390420..1390842 (+) 423 WP_004915093.1 hypothetical protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26613.24 Da        Isoelectric Point: 4.7528

>NTDB_id=470593 H2677_RS06585 WP_004915082.1 1385285..1385992(-) (crp) [Acinetobacter junii strain YR7]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEENAFTEEEFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=470593 H2677_RS06585 WP_004915082.1 1385285..1385992(-) (crp) [Acinetobacter junii strain YR7]
ATGACTTCAAATTTTTCACAGCTTAGCACTGATGCTTTATCACCAGGTCAATTACCTGAATCTGTTAAAGCCTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCGGTGTCAATTATTTTACGTGAAGATGATGAACGTGAGATTGTCGTTGCATACTTAAACCCTGGGGATTTC
TTTGGCGAAATGGGTCTTTTTGAGAAGAACCCACAACGTACTGCGGAAGTAAGAACTCGTGATGTTTGTGAAATCGCCGA
GATTTCATATGACAACTTCCACGAATTAAGCAAACAATATCCTGATTTGAGCTACGCGGTATTTGCTCAATTAGTTCGCC
GCTTAAAAAATACAACACGTAAAGTAACTGACCTTGCATTTATTGATGTGTCTGGTCGTATTGCACGTTGTTTAATTGAT
TTATCTTCACAACCAGAAGCAATGATCTTACCAAATGGTCGTCAGATCCGTATTACTCGCCAAGAGATTGGTCGTATTGT
CGGTTGTTCACGTGAAATGGTTGGACGTGTTCTTAAGACGCTTGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACGTCATTAGAAGAAAATGCATTTACTGAAGAAGAGTTTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

96.17

100

0.962
  crp Vibrio cholerae strain A1552

47.826

88.085

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404