Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H2788_RS17605 Genome accession   NZ_CP059550
Coordinates   3691785..3693206 (+) Length   473 a.a.
NCBI ID   WP_284119259.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain E-022166     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3686785..3698206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS17585 (H2788_17480) thrC 3687040..3688179 (+) 1140 WP_019457006.1 threonine synthase -
  H2788_RS17590 (H2788_17485) pbpG 3688288..3689334 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  H2788_RS17595 (H2788_17490) - 3689546..3690181 (+) 636 WP_019457005.1 response regulator -
  H2788_RS17600 (H2788_17495) pilS 3690192..3691760 (+) 1569 WP_347016679.1 PAS domain-containing sensor histidine kinase Regulator
  H2788_RS17605 (H2788_17500) pilR 3691785..3693206 (+) 1422 WP_284119259.1 sigma-54 dependent transcriptional regulator Regulator
  H2788_RS17610 (H2788_17505) - 3693210..3694394 (-) 1185 WP_284119260.1 S41 family peptidase -
  H2788_RS17615 (H2788_17510) gpmI 3694410..3695957 (-) 1548 WP_347016680.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  H2788_RS17620 (H2788_17515) lptG 3696083..3697153 (-) 1071 WP_004699266.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 53162.35 Da        Isoelectric Point: 6.6210

>NTDB_id=470556 H2788_RS17605 WP_284119259.1 3691785..3693206(+) (pilR) [Acinetobacter seifertii strain E-022166]
MAEQQPLVLLVDDEEDLCLLMQMTLARIGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVNKPINQVHLDQLLQKALNRQQTNQDFAETALENKLLIGRSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPLGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLMLPPLRERGEDVLL
LANHFIQKICMEWETPPKQLSDAAETYLLQQHFPGNVRELRNMIERAITLSDDAQIDVPHLHPAPLRANISSSVPLVSQA
IQNNVTTPQVVKKLPTEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=470556 H2788_RS17605 WP_284119259.1 3691785..3693206(+) (pilR) [Acinetobacter seifertii strain E-022166]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACACTTGCACG
AATAGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACTCAGTTTCATTACGACGCATGCT
TAACCGATTTAAATCTACCTGATGGTAGCGGGTTAGACTTAGTCAAACATGTCTCTCAAAACTACCCCAACACCCCAATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCTGCATTAAAAGCAGGTGCTTTTGATTTTGTGAATAAACC
TATTAACCAAGTCCATCTAGATCAGTTATTGCAAAAGGCGCTCAATCGGCAACAAACAAATCAAGACTTTGCAGAAACGG
CGCTAGAAAATAAATTATTAATCGGCCGTTCTCTACCCATTCAACAATTACGCATTGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCTGTATTTGTTACAGGTGAGTCAGGAACAGGTAAAGAAGTAGTTGCCAACCTAGTTCATCGGTTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACTGAACTCATGGAAAGTGAGCTATTTGGACATAAAA
AAGGCAGTTTTACTGGGGCAACTCAAGATAAACAGGGCCTGATTTTATCGGCTCACGGCGGTAGTTTATTTTTAGATGAA
ATTGCCGAATTACCACTCAGTATGCAAGTCAAACTACTGCGTGCAGTACAGGAAAAAAAGATCCGTCCTCTCGGTTCAGA
TCAGGAAATTGATGTTGATTTCCGTGTCATTAGTGCAAGCCATCAAGACTTGGATTTATTGGTTAGACAAGGTAAATTCC
GTCAGGATTTGTTTTTCCGTATCCATGTTATGGATTTGATGTTACCACCCCTACGAGAACGTGGCGAAGATGTCCTTTTA
CTTGCAAATCACTTTATTCAGAAAATTTGTATGGAGTGGGAAACACCACCCAAACAATTAAGCGACGCAGCCGAGACTTA
TCTCTTACAGCAACACTTTCCTGGCAATGTTCGCGAATTAAGAAACATGATTGAGCGAGCAATCACCCTAAGTGACGATG
CTCAAATTGATGTACCACACTTACATCCAGCACCATTAAGAGCAAATATCTCTAGCTCAGTACCGTTGGTGTCTCAGGCT
ATACAAAATAACGTGACAACGCCTCAAGTTGTAAAAAAATTGCCAACTGAAGGATTGGAGCGTTATTTAGAGAACATTGA
AAAAGATATTCTGCTCAATGCACTCAATATGACCCATTGGAACAGAACTTTAGCAGCAAAAAAACTAGGAATGACGTTTC
GTTCTTTACGTTATCGTTTGAAAAAATTTGGCTTAGACACCGAGACTGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

93.235

100

0.932
  pilR Pseudomonas aeruginosa PAK

50.327

97.04

0.488