Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   H2788_RS17600 Genome accession   NZ_CP059550
Coordinates   3690192..3691760 (+) Length   522 a.a.
NCBI ID   WP_347016679.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain E-022166     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3685192..3696760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS17580 (H2788_17475) - 3685684..3686985 (+) 1302 WP_005301642.1 homoserine dehydrogenase -
  H2788_RS17585 (H2788_17480) thrC 3687040..3688179 (+) 1140 WP_019457006.1 threonine synthase -
  H2788_RS17590 (H2788_17485) pbpG 3688288..3689334 (-) 1047 WP_134263468.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  H2788_RS17595 (H2788_17490) - 3689546..3690181 (+) 636 WP_019457005.1 response regulator -
  H2788_RS17600 (H2788_17495) pilS 3690192..3691760 (+) 1569 WP_347016679.1 PAS domain-containing sensor histidine kinase Regulator
  H2788_RS17605 (H2788_17500) pilR 3691785..3693206 (+) 1422 WP_284119259.1 sigma-54 dependent transcriptional regulator Regulator
  H2788_RS17610 (H2788_17505) - 3693210..3694394 (-) 1185 WP_284119260.1 S41 family peptidase -
  H2788_RS17615 (H2788_17510) gpmI 3694410..3695957 (-) 1548 WP_347016680.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 58997.22 Da        Isoelectric Point: 6.5541

>NTDB_id=470555 H2788_RS17600 WP_347016679.1 3690192..3691760(+) (pilS) [Acinetobacter seifertii strain E-022166]
MHSPLNSSLSHTIFRLGTWYGLYRLIIAVSLTIILVSTNAQTDNSLQQPSLYFYTLLGYSIVSLVQLLGFKFIAAQATRQ
LALFFIVDVICLSLLTFSVGEPNLQLSLLYVIAIFTSAILLSARMSLIITLLAIIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSVELYQLQNINRYILEQIEEGYLVLDEDYNIVLSNPAACSLLGIPPQFANE
KYPLAKWHTDLYEILKFGNLQEGDRFIFESRLSTYSINIKVQHLLVPQQALTLLILQDAQQINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDPEQQNTLRHMIGKQAKRIDSIVQDTLGLARSEKTHPIQIDLSHFITSLFEEDLSDVK
HSIRLEISDNYLKFLFDEKQLRQVMINLVRNALRHNAPDSPNVTINIHSQANKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRIECPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=470555 H2788_RS17600 WP_347016679.1 3690192..3691760(+) (pilS) [Acinetobacter seifertii strain E-022166]
ATGCACTCTCCTTTAAATTCATCCCTGTCCCATACGATTTTTCGTTTGGGCACTTGGTATGGTTTATACCGTCTTATTAT
TGCGGTTAGCCTGACTATTATTTTGGTTTCAACCAATGCTCAAACTGACAATAGTTTGCAGCAACCATCTTTATATTTTT
ACACCCTACTAGGCTACTCAATTGTCAGCCTTGTTCAATTGTTAGGCTTTAAATTTATCGCAGCTCAGGCAACACGCCAG
CTTGCTTTATTTTTTATTGTCGATGTTATTTGTTTGAGTCTACTGACTTTTTCTGTTGGTGAACCAAATTTACAACTTAG
TCTACTTTATGTAATTGCAATCTTTACCTCTGCAATTTTGCTCAGCGCAAGAATGTCTTTAATCATTACCTTGCTTGCGA
TCATTGCAGTTATTTACCAACGCTTCGTGGGTAGTTTGTTCGACTACAACAATCTAAACACGATTGGGAATAGTGCCCTA
CTCGCTTTCTTATTTTTTGTCGTTCATGGGATTGGTCAAATTGCGGTTCAACGCTTTAAATTACTTGAAGCTTTGACCTT
TCACCAGTCAGTTGAACTTTATCAACTTCAAAATATTAACCGTTATATATTAGAACAAATTGAAGAGGGCTATTTAGTCT
TAGATGAAGACTACAACATTGTGCTCAGCAATCCAGCTGCTTGCTCACTGCTCGGTATTCCACCCCAATTTGCCAACGAA
AAATATCCTTTAGCCAAGTGGCATACCGACTTATATGAGATTCTTAAGTTTGGTAACTTACAAGAAGGTGACCGATTTAT
TTTTGAGTCTCGTCTATCGACTTATTCCATTAATATTAAAGTGCAGCACCTTTTGGTCCCACAACAAGCACTGACACTGC
TCATTTTGCAAGATGCCCAGCAAATTAATCAGCAAGCACAACAGCTCAAACTTGCTGCTTTAGGACAACTTTCAGCAAGT
ATTGCACATGAAATCCGCAACCCTTTGGCTGCAATTGTACAAGCAAATGAGCTACTTAAAGATAGCGATCCAGAACAACA
AAATACTTTGCGACATATGATTGGTAAACAAGCCAAACGTATTGACAGTATTGTTCAAGATACTTTGGGGCTTGCACGTA
GTGAAAAAACTCATCCTATTCAGATTGACTTAAGTCATTTTATAACAAGTTTATTCGAAGAAGATTTATCAGACGTTAAG
CACTCTATCAGACTCGAAATATCTGATAATTATCTAAAATTTTTATTTGACGAAAAACAATTACGACAAGTTATGATCAA
TTTGGTGCGAAATGCTTTACGGCATAATGCACCTGATTCACCTAATGTCACGATCAATATTCATTCTCAAGCAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTCTCAAAACGTGATATATCTCAACTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATACTTGTCTCATAGTTTCTGTGAGGCAAACCATGCAAAGCTCACTTATGTAGA
GCAAAAACAAGGGGCATGCTTCAGAATAGAGTGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

PAS fold (PAS)

(203-274)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.146

100

0.921