Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   H2788_RS15680 Genome accession   NZ_CP059550
Coordinates   3303674..3304084 (-) Length   136 a.a.
NCBI ID   WP_284118630.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain E-022166     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3298674..3309084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2788_RS15650 (H2788_15560) - 3298761..3299030 (-) 270 WP_019458135.1 HPr family phosphocarrier protein -
  H2788_RS15655 (H2788_15565) rapZ 3299027..3299878 (-) 852 WP_019458134.1 RNase adapter RapZ -
  H2788_RS15660 (H2788_15570) panC 3299901..3300749 (-) 849 WP_004698600.1 pantoate--beta-alanine ligase -
  H2788_RS15665 (H2788_15575) panB 3300753..3301562 (-) 810 WP_004698602.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  H2788_RS15670 (H2788_15580) folK 3301606..3302088 (-) 483 WP_004698604.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  H2788_RS15675 (H2788_15585) pcnB 3302085..3303548 (-) 1464 WP_347016558.1 polynucleotide adenylyltransferase PcnB -
  H2788_RS15680 (H2788_15590) comEA 3303674..3304084 (-) 411 WP_284118630.1 ComEA family DNA-binding protein Machinery gene
  H2788_RS15685 (H2788_15595) mazG 3304053..3304859 (-) 807 WP_347016560.1 nucleoside triphosphate pyrophosphohydrolase -
  H2788_RS15690 (H2788_15600) - 3304972..3305745 (+) 774 WP_347016562.1 SDR family oxidoreductase -
  H2788_RS15695 (H2788_15605) - 3305790..3308096 (-) 2307 WP_004698623.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15549.76 Da        Isoelectric Point: 10.3101

>NTDB_id=470544 H2788_RS15680 WP_284118630.1 3303674..3304084(-) (comEA) [Acinetobacter seifertii strain E-022166]
MRYSMRSWKNNCFILMMLCLGVISPSVFAQSFDQNFQEWKAKQQMYDQKLNVSKPSHSYGSKNSYTKSSNDSTGQIHLNQ
ATVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=470544 H2788_RS15680 WP_284118630.1 3303674..3304084(-) (comEA) [Acinetobacter seifertii strain E-022166]
ATGCGATACAGCATGAGAAGTTGGAAAAATAATTGTTTTATTTTAATGATGTTGTGCTTAGGCGTAATTTCACCTTCGGT
TTTTGCTCAATCTTTTGATCAAAACTTTCAGGAATGGAAGGCTAAACAGCAGATGTACGACCAAAAGTTAAACGTCTCTA
AGCCTTCTCATTCATATGGTTCTAAAAATTCTTATACTAAGAGTTCTAATGACTCTACAGGGCAAATTCACTTGAATCAG
GCCACTGTAAATGAGTTTCAGCAGTTAAAAGGCGTAGGTGAGAAAAAGGCGCAAGCGATTGTAGAATATAGACAGAAGAA
CGGAAGTTTTAAAAATATTGATGAAATTAAAAACGTCAAAGGAATCGGCCCCGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

88.235

100

0.882
  comEA Acinetobacter baumannii D1279779

86.765

100

0.868
  comEA Acinetobacter baylyi ADP1

48.649

81.618

0.397