Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H2789_RS17150 Genome accession   NZ_CP059549
Coordinates   3631213..3632631 (+) Length   472 a.a.
NCBI ID   WP_347019047.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3626213..3637631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS17130 (H2789_17115) thrC 3626468..3627607 (+) 1140 WP_003654438.1 threonine synthase -
  H2789_RS17135 (H2789_17120) pbpG 3627715..3628761 (-) 1047 WP_347019045.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  H2789_RS17140 (H2789_17125) - 3628974..3629609 (+) 636 WP_003654436.1 response regulator -
  H2789_RS17145 (H2789_17130) pilS 3629620..3631188 (+) 1569 WP_347019046.1 PAS domain-containing sensor histidine kinase Regulator
  H2789_RS17150 (H2789_17135) pilR 3631213..3632631 (+) 1419 WP_347019047.1 sigma-54 dependent transcriptional regulator Regulator
  H2789_RS17155 (H2789_17140) - 3632636..3633820 (-) 1185 WP_347019048.1 S41 family peptidase -
  H2789_RS17160 (H2789_17145) gpmI 3633836..3635383 (-) 1548 WP_347019049.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  H2789_RS17165 (H2789_17150) lptG 3635510..3636580 (-) 1071 WP_151744796.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 52965.19 Da        Isoelectric Point: 6.1987

>NTDB_id=470515 H2789_RS17150 WP_347019047.1 3631213..3632631(+) (pilR) [Acinetobacter calcoaceticus strain NCIMB13260]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLELVKHVSQTYSQTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPINQIHLDQLLKKALNQPKPEHEFGETTLENDLLIGRSPPIQNLRIAIKKIARS
QAPVFVTGESGTGKEVVANLIHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVRQGKFRQDLFFRIHVMDIMLPPLRERGGDILL
LANHFIQKVCMEWEIPSKQLTTTAETYLLQQDFPGNVRELRNMIERAITLSDDECIDLTHLAPPLRGSSINSQITTKPLN
DTSTAIAQTRPKLPMEGLERYLENIEKDILLNALDMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTELGEEV

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=470515 H2789_RS17150 WP_347019047.1 3631213..3632631(+) (pilR) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTTTTAATGCAAATGACTCTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTTACTCAGTTTCATTACGATGCATGTT
TAACCGATTTAAACCTACCCGATGGTAGCGGTTTAGAATTAGTTAAACATGTTTCTCAAACTTATTCTCAGACACCAATT
GCAGTTCTAACTGCGTACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCGGGAGCTTTTGATTTTGTAAGTAAACC
TATTAACCAAATTCATTTAGATCAGTTATTAAAAAAAGCGCTAAATCAGCCAAAACCAGAGCATGAGTTTGGTGAAACAA
CGTTGGAAAATGATCTATTAATTGGACGTTCTCCACCGATACAAAACTTGCGTATTGCTATAAAAAAAATAGCTCGTTCC
CAAGCTCCTGTGTTTGTTACGGGGGAATCTGGTACAGGTAAAGAAGTTGTTGCTAATCTTATTCACCGTTTGAGTAACCG
CAGCGAAGGTCCATTTATTGCGATTAACTGTGGAGCAATTCCAACTGAGCTCATGGAAAGTGAACTTTTTGGACATAAAA
AAGGTAGCTTTACGGGAGCGACCCAAGACAAACAAGGCCTGATTTTGTCCGCTCATGGCGGCAGCTTATTTTTAGATGAA
ATTGCTGAATTGCCTTTAAGTATGCAAGTCAAATTACTTCGGGCAGTACAAGAGAAAAAAATTCGTCCAGTAGGTTCAGA
TCAGGAAATCGATGTTGATTTTCGGGTGATCAGCGCCAGCCACCAAGATTTAGAGTTATTAGTCCGACAAGGCAAATTCC
GTCAGGACTTATTTTTCCGTATTCATGTTATGGATATCATGTTGCCGCCACTGCGTGAGCGCGGTGGAGATATTTTGTTA
TTAGCCAATCATTTTATTCAAAAGGTTTGTATGGAATGGGAAATTCCAAGCAAACAATTAACTACTACTGCTGAAACTTA
TTTATTGCAGCAAGATTTTCCAGGTAATGTTCGTGAATTAAGAAATATGATTGAACGAGCTATTACCTTAAGTGATGATG
AATGTATTGATTTAACACATTTAGCACCTCCTCTCAGAGGCAGTAGCATTAACTCGCAAATCACCACTAAACCATTGAAT
GACACATCAACTGCGATTGCTCAGACTCGGCCAAAATTACCAATGGAAGGCTTAGAACGTTACTTAGAAAATATTGAAAA
AGATATTCTACTGAACGCATTGGACATGACACATTGGAACCGGACCTTAGCAGCTAAAAAGTTAGGAATGACCTTCCGTT
CTTTACGCTATCGATTGAAAAAGTTTGGCTTAGATACTGAATTGGGAGAGGAAGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-116)

Bacterial regulatory protein, Fis family (HTH_8)

(422-462)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

86.681

100

0.869
  pilR Pseudomonas aeruginosa PAK

51.092

97.034

0.496