Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   H2789_RS17145 Genome accession   NZ_CP059549
Coordinates   3629620..3631188 (+) Length   522 a.a.
NCBI ID   WP_347019046.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3624620..3636188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS17125 (H2789_17110) - 3625112..3626413 (+) 1302 WP_004640662.1 homoserine dehydrogenase -
  H2789_RS17130 (H2789_17115) thrC 3626468..3627607 (+) 1140 WP_003654438.1 threonine synthase -
  H2789_RS17135 (H2789_17120) pbpG 3627715..3628761 (-) 1047 WP_347019045.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  H2789_RS17140 (H2789_17125) - 3628974..3629609 (+) 636 WP_003654436.1 response regulator -
  H2789_RS17145 (H2789_17130) pilS 3629620..3631188 (+) 1569 WP_347019046.1 PAS domain-containing sensor histidine kinase Regulator
  H2789_RS17150 (H2789_17135) pilR 3631213..3632631 (+) 1419 WP_347019047.1 sigma-54 dependent transcriptional regulator Regulator
  H2789_RS17155 (H2789_17140) - 3632636..3633820 (-) 1185 WP_347019048.1 S41 family peptidase -
  H2789_RS17160 (H2789_17145) gpmI 3633836..3635383 (-) 1548 WP_347019049.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59092.67 Da        Isoelectric Point: 6.4378

>NTDB_id=470514 H2789_RS17145 WP_347019046.1 3629620..3631188(+) (pilS) [Acinetobacter calcoaceticus strain NCIMB13260]
MQFPLNSSLSNTIFRLGTWYGLYRLIIAVSLNIILVLTDAQIDNSLQQPVLYSYTLLGYSILSLLQLLCFKFISTQATKQ
LILFFVVDVICLSLLTFSVGEPNLQLSLLYVITIFTSAILLSARMSLLITLLAVIAVIYQRFVGSLFDYNNLNTIGNSAL
LAFLFFVVHGIGQIAVQRFKLLEALTFHQSIELYQLQNINRYILEQIEEGYLVLDENYDIVLSNPAACSLLGIPPQFASE
KYPLAKWHPDLFEILKFDNLQEGDRFIFESRLSAYSINIKVQHLVVPQQALTLLILQDAQHINQQAQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKDSDLEQQNTLRRMIGKQTKRIDSIVQDTLGLASSERTHPIQIELNDFIKTLLDEDLSDVK
HSIQLKISDSFLKLLFDEKQLRQVLINLVRNALRHNAPDSPHVLINIHSQTNKIYIDVIDYGEGVSKRDISQLFKPFFST
EINGTGLGLYLSHSFCEANHAKLTYVEQKQGACFRMACPIIY

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=470514 H2789_RS17145 WP_347019046.1 3629620..3631188(+) (pilS) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGCAATTTCCCTTAAACTCATCGTTGTCCAATACGATTTTTCGTTTGGGCACGTGGTATGGTTTATATCGTCTTATTAT
TGCGGTTAGCCTCAATATTATTTTGGTTTTAACCGATGCTCAAATCGACAATAGTCTACAACAGCCCGTTTTATATTCTT
ACACACTGCTTGGCTATTCCATATTAAGCCTTCTTCAGCTTTTGTGTTTTAAGTTTATTTCAACTCAGGCAACAAAGCAG
CTTATTTTATTTTTTGTAGTTGATGTTATCTGTCTGAGTTTACTTACATTTTCTGTAGGTGAACCAAATCTACAACTCAG
CTTGCTGTATGTTATTACTATATTTACCTCGGCAATTTTACTCAGCGCAAGAATGTCTTTACTCATTACATTACTTGCGG
TCATTGCCGTTATTTACCAACGTTTTGTCGGTAGTTTATTTGACTACAATAATCTAAATACTATTGGTAATAGTGCTTTA
TTAGCCTTCTTATTTTTTGTGGTGCATGGGATCGGACAAATTGCGGTTCAGCGCTTTAAATTACTTGAGGCGCTAACTTT
CCACCAATCAATAGAACTCTATCAACTACAAAATATTAACCGCTATATTTTGGAACAAATTGAAGAAGGCTATCTTGTTC
TAGATGAAAACTACGACATTGTTCTAAGTAATCCGGCCGCCTGCTCTCTGTTAGGCATTCCCCCACAATTTGCCAGTGAA
AAATATCCTTTAGCTAAATGGCACCCCGATTTATTTGAAATTCTTAAGTTTGATAACCTACAAGAAGGTGATCGATTTAT
TTTTGAGTCTCGGCTGTCGGCTTACTCTATTAACATTAAAGTGCAGCATCTTGTGGTGCCGCAACAAGCATTGACGCTGC
TCATTTTACAAGATGCACAACACATTAATCAGCAAGCTCAACAACTCAAACTTGCTGCTTTAGGGCAACTTTCAGCCAGT
ATTGCACATGAAATCCGTAATCCTCTTGCAGCAATTGTTCAAGCAAATGAATTACTTAAAGATAGTGATTTAGAGCAGCA
AAACACTTTACGCCGTATGATTGGCAAGCAAACAAAACGCATCGATAGTATTGTTCAAGACACCTTAGGACTTGCCAGTA
GTGAAAGAACTCACCCAATCCAGATTGAATTAAATGACTTCATAAAGACATTATTAGATGAAGATCTATCGGATGTTAAA
CATTCTATACAACTTAAAATTTCTGATTCATTCTTAAAATTATTATTTGACGAGAAACAACTAAGACAAGTGCTGATTAA
CCTTGTCAGGAATGCTTTACGACATAATGCACCGGATTCACCCCATGTTCTGATCAACATTCATTCACAAACAAATAAAA
TTTATATTGATGTGATCGATTACGGTGAAGGTGTTTCAAAACGTGATATATCTCAATTATTTAAACCATTTTTTAGTACC
GAAATTAATGGAACTGGTTTAGGATTATATTTGTCTCATAGTTTTTGTGAGGCAAACCATGCAAAGCTCACGTATGTAGA
GCAAAAACAAGGGGCATGCTTCCGAATGGCATGCCCAATAATATATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-375)

PAS fold (PAS)

(203-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

92.72

100

0.927