Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   H2789_RS15385 Genome accession   NZ_CP059549
Coordinates   3259505..3259903 (-) Length   132 a.a.
NCBI ID   WP_347018904.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3254505..3264903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS15355 (H2789_15335) - 3254588..3254857 (-) 270 WP_013198928.1 HPr family phosphocarrier protein -
  H2789_RS15360 (H2789_15340) rapZ 3254854..3255705 (-) 852 WP_003655028.1 RNase adapter RapZ -
  H2789_RS15365 (H2789_15345) panC 3255729..3256577 (-) 849 WP_056482749.1 pantoate--beta-alanine ligase -
  H2789_RS15370 (H2789_15350) panB 3256581..3257390 (-) 810 WP_003655024.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  H2789_RS15375 (H2789_15355) folK 3257437..3257919 (-) 483 WP_003655023.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  H2789_RS15380 (H2789_15360) pcnB 3257916..3259379 (-) 1464 WP_127493035.1 polynucleotide adenylyltransferase PcnB -
  H2789_RS15385 (H2789_15365) comEA 3259505..3259903 (-) 399 WP_347018904.1 ComEA family DNA-binding protein Machinery gene
  H2789_RS15390 (H2789_15370) mazG 3259878..3260678 (-) 801 WP_347018905.1 nucleoside triphosphate pyrophosphohydrolase -
  H2789_RS15395 (H2789_15375) - 3260791..3261564 (+) 774 WP_132070806.1 SDR family oxidoreductase -
  H2789_RS15400 (H2789_15380) - 3261612..3263918 (-) 2307 WP_003655013.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15106.31 Da        Isoelectric Point: 10.3091

>NTDB_id=470503 H2789_RS15385 WP_347018904.1 3259505..3259903(-) (comEA) [Acinetobacter calcoaceticus strain NCIMB13260]
MQLSMNLCKSKYFIILFWSLISSTLIQAQSFDQNFKDWKAKQQMYDQKLSTQHSSHSNAPKSSTMTDFSGQVHLNQANID
ELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLSL

Nucleotide


Download         Length: 399 bp        

>NTDB_id=470503 H2789_RS15385 WP_347018904.1 3259505..3259903(-) (comEA) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGCAGCTCAGCATGAATCTTTGTAAGAGTAAGTATTTTATTATTTTATTTTGGAGCCTGATTTCATCAACACTGATTCA
GGCCCAATCTTTCGATCAAAATTTTAAGGACTGGAAAGCTAAACAGCAGATGTATGATCAGAAGTTAAGCACGCAACATT
CCTCTCATTCTAATGCCCCAAAAAGTTCAACAATGACTGATTTTTCAGGGCAAGTTCACTTGAATCAAGCCAATATTGAT
GAGCTTCAAAAGCTAAAAGGTATTGGTGAGAAAAAGGCTCAGGCGATTGTAGAATACCGCCAAAAGAATGGTGGTTTTAA
AAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGGTTGAGTTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(70-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

66.912

100

0.689
  comEA Acinetobacter baumannii D1279779

65.441

100

0.674
  comEA Acinetobacter baylyi ADP1

41.27

95.455

0.394