Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JS513_RS06970 Genome accession   NZ_CP069799
Coordinates   1470428..1471054 (+) Length   208 a.a.
NCBI ID   WP_001108887.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 014S_SA     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1465428..1476054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JS513_RS06940 (JS513_06940) - 1466412..1466744 (-) 333 WP_000516800.1 DUF4889 domain-containing protein -
  JS513_RS06945 (JS513_06945) - 1466828..1467973 (-) 1146 WP_000487150.1 class I SAM-dependent RNA methyltransferase -
  JS513_RS06955 (JS513_06955) gpsB 1468624..1468968 (-) 345 WP_001286320.1 cell division regulator GpsB -
  JS513_RS06960 (JS513_06960) - 1468982..1469545 (-) 564 WP_000241308.1 DUF1273 domain-containing protein -
  JS513_RS06965 (JS513_06965) - 1469538..1469888 (-) 351 WP_001000804.1 YppE family protein -
  JS513_RS06970 (JS513_06970) recU 1470428..1471054 (+) 627 WP_001108887.1 Holliday junction resolvase RecU Machinery gene
  JS513_RS06975 (JS513_06975) - 1471051..1473234 (+) 2184 WP_000138340.1 transglycosylase domain-containing protein -
  JS513_RS06980 (JS513_06980) - 1473800..1474141 (-) 342 WP_000161700.1 YpoC family protein -
  JS513_RS06985 (JS513_06985) nth 1474146..1474805 (-) 660 WP_000253765.1 endonuclease III -
  JS513_RS06990 (JS513_06990) - 1474795..1475481 (-) 687 WP_000362218.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24413.79 Da        Isoelectric Point: 9.7084

>NTDB_id=470503 JS513_RS06970 WP_001108887.1 1470428..1471054(+) (recU) [Staphylococcus aureus strain 014S_SA]
MNYPNGKPYRKNSAIDGGKKTAAFSNIEYGGRGMSLEKDIEHSNAFYLKSDIAVIHKKPTPVQIVNVNYPKRSKAVINEA
YFRTPSTTDYNGVYQGYYIDFEAKETKNKTSFPLNNIHDHQVEHMKNAYQQKGIVFLMIRFKTLDEVYLLPYSKFEVFWK
RYKDNIKKSITVDEIRKNGYHIPYQYQPRLDYLKAVDKLILDESEDRV

Nucleotide


Download         Length: 627 bp        

>NTDB_id=470503 JS513_RS06970 WP_001108887.1 1470428..1471054(+) (recU) [Staphylococcus aureus strain 014S_SA]
ATGAATTATCCAAATGGTAAACCATATCGTAAAAATAGTGCTATAGACGGAGGGAAAAAGACCGCTGCCTTTAGTAATAT
TGAGTATGGTGGACGTGGTATGTCACTTGAAAAAGATATCGAACATTCAAATGCTTTTTATCTTAAAAGCGACATTGCAG
TTATTCACAAAAAGCCTACGCCAGTACAAATAGTTAATGTCAACTATCCTAAACGGAGTAAAGCTGTGATTAACGAAGCT
TATTTTCGTACACCTTCAACAACTGATTACAACGGCGTTTATCAAGGTTATTATATTGATTTTGAAGCAAAGGAAACTAA
AAACAAGACGTCCTTTCCTTTAAATAATATTCATGACCATCAAGTCGAACATATGAAAAATGCATATCAACAAAAAGGTA
TTGTGTTTTTAATGATTCGTTTTAAAACGCTAGATGAAGTTTATCTTTTACCCTATTCAAAATTCGAAGTATTTTGGAAG
AGATATAAAGATAATATTAAAAAGTCTATAACAGTTGATGAAATACGAAAAAATGGTTACCATATTCCTTATCAGTATCA
ACCAAGATTAGACTATCTAAAAGCAGTTGATAAGTTGATATTAGATGAAAGTGAGGACCGCGTATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(32-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

53.14

99.519

0.529