Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   H2789_RS12660 Genome accession   NZ_CP059549
Coordinates   2672575..2673282 (+) Length   235 a.a.
NCBI ID   WP_005041938.1    Uniprot ID   -
Organism   Acinetobacter calcoaceticus strain NCIMB13260     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2667575..2678282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2789_RS12640 (H2789_12635) - 2670389..2671198 (+) 810 WP_347018654.1 peptidoglycan DD-metalloendopeptidase family protein -
  H2789_RS12645 (H2789_12640) - 2671195..2671620 (-) 426 WP_347020230.1 GNAT family N-acetyltransferase -
  H2789_RS12650 (H2789_12645) - 2671713..2672135 (-) 423 WP_005041936.1 OsmC family protein -
  H2789_RS12655 - 2672271..2672333 (-) 63 Protein_2478 hypothetical protein -
  H2789_RS12660 (H2789_12650) crp 2672575..2673282 (+) 708 WP_005041938.1 cAMP-activated global transcriptional regulator CRP Regulator
  H2789_RS12665 (H2789_12655) - 2673442..2674491 (+) 1050 WP_347018655.1 NADP(H)-dependent aldo-keto reductase -
  H2789_RS12670 (H2789_12660) - 2674547..2675329 (-) 783 WP_347018656.1 M48 family metallopeptidase -
  H2789_RS12675 (H2789_12665) - 2675446..2675763 (-) 318 WP_133746483.1 hypothetical protein -
  H2789_RS12680 (H2789_12670) - 2675884..2677203 (-) 1320 WP_003652692.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26479.08 Da        Isoelectric Point: 4.6469

>NTDB_id=470499 H2789_RS12660 WP_005041938.1 2672575..2673282(+) (crp) [Acinetobacter calcoaceticus strain NCIMB13260]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDVSLEDAPVSDDDYDDDE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=470499 H2789_RS12660 WP_005041938.1 2672575..2673282(+) (crp) [Acinetobacter calcoaceticus strain NCIMB13260]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCCCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCGAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTTGTTGCATATTTGAATCCGGGCGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACTCGTGATGTCTGTGAAATTGCAGA
AATTTCTTATGACAACTTTCACGAACTTAGCAAACAATATCCAGACTTAAGTTATGCTGTTTTTGCACAACTCGTTCGCC
GTCTAAAAAATACGACCCGTAAAATGACAGATCTTGCATTTATCGATGTGTCTGGCCGTATTGCACGTTGTTTAATCGAC
CTATCTTCACAGCCAGAAGCAATGATTTTGCCAAATGGTCGTCAAATTCGTATTACTCGTCAAGAAATTGGCCGTATTGT
AGGTTGTTCACGTGAGATGGTTGGCCGTGTACTCAAAACCTTAGAAGATCAAGGCATGATCCAAACAGATGGTAAAGCTA
TTCTTATTTTTGATGTTTCATTAGAAGACGCACCTGTTTCTGATGACGACTATGATGATGACGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

97.021

100

0.97
  crp Vibrio cholerae strain A1552

48.223

83.83

0.404
  crp Haemophilus influenzae Rd KW20

48.705

82.128

0.4