Detailed information NTG0470430

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H2784_RS17895
• Genome accession: NZ_CP059547
• Coordinates: 3456681..3457541 (+)
• Length: 286 a.a.
• NCBI ID: WP_086442553.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain 10_3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3451681..3462541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H2784_RS16060 (H2784_16060)	secG	3452286..3452615 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
H2784_RS16065 (H2784_16065)	tpiA	3452628..3453422 (-)	795	WP_032060899.1	triose-phosphate isomerase	-
H2784_RS16070 (H2784_16070)	pilB	3453713..3455425 (+)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
H2784_RS16075 (H2784_16075)	pilC	3455455..3456681 (+)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
H2784_RS17895 (H2784_16080)	pilD	3456681..3457541 (+)	861	WP_086442553.1	prepilin peptidase	Machinery gene
H2784_RS16085 (H2784_16085)	coaE	3457543..3458139 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
H2784_RS16090 (H2784_16090)	-	3458136..3459050 (-)	915	WP_000075015.1	DMT family transporter	-
H2784_RS16095 (H2784_16095)	rlmB	3459086..3459835 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
H2784_RS16100 (H2784_16100)	-	3459937..3460263 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
H2784_RS16105 (H2784_16105)	-	3460340..3461650 (-)	1311	WP_000753282.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32086.49 Da
• Isoelectric Point: 7.1041

>NTDB_id=470430 H2784_RS17895 WP_086442553.1 3456681..3457541(+) (pilD) [Acinetobacter baumannii strain 10_3]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=470430 H2784_RS17895 WP_086442553.1 3456681..3457541(+) (pilD) [Acinetobacter baumannii strain 10_3]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACTATGTTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAACCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441