Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   H2786_RS01675 Genome accession   NZ_CP059542
Coordinates   354720..355202 (+) Length   160 a.a.
NCBI ID   WP_032058632.1    Uniprot ID   A0A009PK09
Organism   Acinetobacter baumannii strain E-011922     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349720..360202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2786_RS01665 (H2786_01665) pilX 350023..350841 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H2786_RS01670 (H2786_01670) pilY1 350853..354707 (+) 3855 WP_188199216.1 PilC/PilY family type IV pilus protein Machinery gene
  H2786_RS01675 (H2786_01675) pilY2 354720..355202 (+) 483 WP_032058632.1 type IV pilin protein Machinery gene
  H2786_RS01680 (H2786_01680) pilE 355199..355624 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene
  H2786_RS01685 (H2786_01685) rpsP 355771..356022 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  H2786_RS01690 (H2786_01690) rimM 356042..356590 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  H2786_RS01695 (H2786_01695) trmD 356636..357376 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  H2786_RS01700 (H2786_01700) rplS 357584..357952 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  H2786_RS01705 (H2786_01705) - 358004..358945 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  H2786_RS01710 (H2786_01710) - 359060..360091 (-) 1032 WP_001189457.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17533.76 Da        Isoelectric Point: 8.4834

>NTDB_id=470300 H2786_RS01675 WP_032058632.1 354720..355202(+) (pilY2) [Acinetobacter baumannii strain E-011922]
MNKYSILRFNQGVTLIELMVVVVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=470300 H2786_RS01675 WP_032058632.1 354720..355202(+) (pilY2) [Acinetobacter baumannii strain E-011922]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGGTTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCCGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

40.116

100

0.431