Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   H2786_RS01665 Genome accession   NZ_CP059542
Coordinates   350023..350841 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain E-011922     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345023..355841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2786_RS01630 (H2786_01630) - 345605..345735 (-) 131 Protein_311 hypothetical protein -
  H2786_RS01635 (H2786_01635) rpoZ 345774..346052 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  H2786_RS01640 (H2786_01640) gmk 346125..346754 (-) 630 WP_000015937.1 guanylate kinase -
  H2786_RS01645 (H2786_01645) ispH 346877..347827 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H2786_RS01650 (H2786_01650) fimU 347997..348470 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  H2786_RS01655 (H2786_01655) pilV 348464..349024 (+) 561 WP_086351978.1 type IV pilus modification protein PilV Machinery gene
  H2786_RS01660 (H2786_01660) pilW 349025..350026 (+) 1002 WP_000079191.1 PilW family protein Machinery gene
  H2786_RS01665 (H2786_01665) pilX 350023..350841 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  H2786_RS01670 (H2786_01670) pilY1 350853..354707 (+) 3855 WP_188199216.1 PilC/PilY family type IV pilus protein Machinery gene
  H2786_RS01675 (H2786_01675) pilY2 354720..355202 (+) 483 WP_032058632.1 type IV pilin protein Machinery gene
  H2786_RS01680 (H2786_01680) pilE 355199..355624 (+) 426 WP_000788339.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=470298 H2786_RS01665 WP_000149374.1 350023..350841(+) (pilX) [Acinetobacter baumannii strain E-011922]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=470298 H2786_RS01665 WP_000149374.1 350023..350841(+) (pilX) [Acinetobacter baumannii strain E-011922]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993