Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   H2N97_RS12720 Genome accession   NZ_CP059497
Coordinates   2604932..2606002 (-) Length   356 a.a.
NCBI ID   WP_012117985.1    Uniprot ID   A0A411A7V3
Organism   Bacillus velezensis strain JSRB 08     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2599932..2611002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2N97_RS12670 (H2N97_12670) sipW 2599991..2600575 (-) 585 WP_012117977.1 signal peptidase I SipW -
  H2N97_RS12675 (H2N97_12675) tapA 2600547..2601218 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  H2N97_RS12680 (H2N97_12680) - 2601477..2601806 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  H2N97_RS12685 (H2N97_12685) - 2601847..2602026 (-) 180 WP_003153093.1 YqzE family protein -
  H2N97_RS12690 (H2N97_12690) comGG 2602083..2602460 (-) 378 WP_025649851.1 competence type IV pilus minor pilin ComGG Machinery gene
  H2N97_RS12695 (H2N97_12695) comGF 2602461..2602856 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  H2N97_RS12700 (H2N97_12700) comGE 2602870..2603184 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  H2N97_RS12705 (H2N97_12705) comGD 2603168..2603605 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  H2N97_RS12710 (H2N97_12710) comGC 2603595..2603903 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene
  H2N97_RS12715 (H2N97_12715) comGB 2603908..2604945 (-) 1038 WP_014418377.1 competence type IV pilus assembly protein ComGB Machinery gene
  H2N97_RS12720 (H2N97_12720) comGA 2604932..2606002 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  H2N97_RS12725 (H2N97_12725) - 2606195..2607145 (-) 951 WP_014418379.1 magnesium transporter CorA family protein -
  H2N97_RS12730 (H2N97_12730) - 2607291..2608592 (+) 1302 WP_017418142.1 hemolysin family protein -
  H2N97_RS12735 (H2N97_12735) - 2608630..2609460 (-) 831 WP_017418143.1 STAS domain-containing protein -
  H2N97_RS12745 (H2N97_12745) - 2609667..2610047 (-) 381 WP_003153079.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  H2N97_RS12750 (H2N97_12750) - 2610284..2610529 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40557.86 Da        Isoelectric Point: 9.4784

>NTDB_id=470220 H2N97_RS12720 WP_012117985.1 2604932..2606002(-) (comGA) [Bacillus velezensis strain JSRB 08]
MKNIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=470220 H2N97_RS12720 WP_012117985.1 2604932..2606002(-) (comGA) [Bacillus velezensis strain JSRB 08]
GTGAAAAATATTGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAGGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGTG
TAAGGCTTATTTCTCATTTCAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGAAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCGACAGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCTTTATTTCGGGGGGCGGGCGCCGCATTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCGACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAACGGCATTTCAACCGGCGGATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGCTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG
GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCCGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTTGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
TATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCTCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A7V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.303

100

0.823
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374