Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   H2N97_RS12660 Genome accession   NZ_CP059497
Coordinates   2598758..2599093 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain JSRB 08     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2593758..2604093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2N97_RS12640 (H2N97_12640) gcvT 2594364..2595464 (-) 1101 WP_134986820.1 glycine cleavage system aminomethyltransferase GcvT -
  H2N97_RS12645 (H2N97_12645) - 2595888..2597558 (+) 1671 WP_017418135.1 DEAD/DEAH box helicase -
  H2N97_RS12650 (H2N97_12650) - 2597580..2598374 (+) 795 WP_014305407.1 YqhG family protein -
  H2N97_RS12655 (H2N97_12655) sinI 2598551..2598724 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  H2N97_RS12660 (H2N97_12660) sinR 2598758..2599093 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  H2N97_RS12665 (H2N97_12665) tasA 2599141..2599926 (-) 786 WP_017418136.1 biofilm matrix protein TasA -
  H2N97_RS12670 (H2N97_12670) sipW 2599991..2600575 (-) 585 WP_012117977.1 signal peptidase I SipW -
  H2N97_RS12675 (H2N97_12675) tapA 2600547..2601218 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  H2N97_RS12680 (H2N97_12680) - 2601477..2601806 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  H2N97_RS12685 (H2N97_12685) - 2601847..2602026 (-) 180 WP_003153093.1 YqzE family protein -
  H2N97_RS12690 (H2N97_12690) comGG 2602083..2602460 (-) 378 WP_025649851.1 competence type IV pilus minor pilin ComGG Machinery gene
  H2N97_RS12695 (H2N97_12695) comGF 2602461..2602856 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  H2N97_RS12700 (H2N97_12700) comGE 2602870..2603184 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  H2N97_RS12705 (H2N97_12705) comGD 2603168..2603605 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  H2N97_RS12710 (H2N97_12710) comGC 2603595..2603903 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=470214 H2N97_RS12660 WP_003153104.1 2598758..2599093(+) (sinR) [Bacillus velezensis strain JSRB 08]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=470214 H2N97_RS12660 WP_003153104.1 2598758..2599093(+) (sinR) [Bacillus velezensis strain JSRB 08]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991