Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   H2R00_RS19775 Genome accession   NZ_CP059494
Coordinates   3996471..3997109 (+) Length   212 a.a.
NCBI ID   WP_003184849.1    Uniprot ID   D9YRJ9
Organism   Bacillus haynesii strain P19     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3991471..4002109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS19750 - 3991839..3992186 (-) 348 WP_244958258.1 hypothetical protein -
  H2R00_RS19755 degQ 3992672..3992812 (+) 141 WP_003184860.1 degradation enzyme regulation protein DegQ Regulator
  H2R00_RS19760 - 3993002..3993883 (+) 882 WP_182070141.1 polyprenyl synthetase family protein -
  H2R00_RS19765 comX 3993887..3994060 (+) 174 WP_176276343.1 competence pheromone ComX -
  H2R00_RS19770 comP 3994072..3996384 (+) 2313 WP_182070142.1 ATP-binding protein Regulator
  H2R00_RS19775 comA 3996471..3997109 (+) 639 WP_003184849.1 response regulator transcription factor Regulator
  H2R00_RS19780 - 3997126..3997515 (+) 390 WP_154999191.1 hotdog fold thioesterase -
  H2R00_RS19785 mnhG 3997554..3997928 (-) 375 WP_075751277.1 monovalent cation/H(+) antiporter subunit G -
  H2R00_RS19790 - 3997912..3998196 (-) 285 WP_003184842.1 Na(+)/H(+) antiporter subunit F1 -
  H2R00_RS19795 - 3998196..3998672 (-) 477 WP_154999192.1 Na+/H+ antiporter subunit E -
  H2R00_RS19800 - 3998678..4000156 (-) 1479 WP_154999193.1 Na+/H+ antiporter subunit D -
  H2R00_RS19805 - 4000149..4000490 (-) 342 WP_154999194.1 Na(+)/H(+) antiporter subunit C -
  H2R00_RS19810 - 4000490..4000921 (-) 432 WP_154999195.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24146.54 Da        Isoelectric Point: 4.7105

>NTDB_id=470096 H2R00_RS19775 WP_003184849.1 3996471..3997109(+) (comA) [Bacillus haynesii strain P19]
MRRLLVIDDHPAVMEGTKAILETNQDFVVDCLSPEASEQFLKKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYFKQLITQQKSKSNSQQTQHDLLTERECLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFSKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=470096 H2R00_RS19775 WP_003184849.1 3996471..3997109(+) (comA) [Bacillus haynesii strain P19]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACGAAGGCAATTCTTGAAACGAACCAGGACTT
TGTTGTCGATTGCCTCAGCCCTGAAGCCAGCGAACAATTTCTCAAGAAACATGATTTTTCTGCGTATGACCTGATCTTAA
TGGATTTAAATTTGGGTGAAATCAACGGTATGGACCTATCTAAGAAAATCCTTGAGACATGTTCATCATGCAAAATTATC
GTTTACACAGGGTATGAAGTCGAAGATTATTTTGAAGAGGCGATTCGTTCCGGCATGCATGGCGCCATTAGCAAAACGGA
ATCGAAGGAAAAGATTATAGAGTACATATATCAGGTGCTGGATAATAAAATTGTCGTCGATTATGATTATTTCAAGCAGC
TGATTACACAGCAAAAATCGAAGTCAAACAGCCAGCAGACTCAGCACGATCTCTTGACTGAAAGGGAATGCCTGATCTTA
AAAGAAGTCGAAAAAGGCTACACAAATCAGGAAATTGCAGATGCGCTTCATTTAAGCAAGAGGTCGATCGAATACAGTCT
GACTTCAGTATTCAGCAAACTGAATGTAGGATCACGGACAGAGGCTGTTTTAATCGCGAAATCTGAAGGGGTACTTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D9YRJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

77.103

100

0.778