Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H2R00_RS15175 Genome accession   NZ_CP059494
Coordinates   3057222..3057734 (+) Length   170 a.a.
NCBI ID   WP_154996095.1    Uniprot ID   -
Organism   Bacillus haynesii strain P19     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3052222..3062734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H2R00_RS15145 - 3052383..3053231 (+) 849 WP_003178034.1 ParB/RepB/Spo0J family partition protein -
  H2R00_RS15150 yyaC 3053268..3053885 (-) 618 WP_182069625.1 spore protease YyaC -
  H2R00_RS15155 - 3054188..3055201 (+) 1014 WP_154996099.1 GerAB/ArcD/ProY family transporter -
  H2R00_RS15160 - 3055289..3055495 (+) 207 WP_154996123.1 DUF951 domain-containing protein -
  H2R00_RS15165 ychF 3055674..3056774 (+) 1101 WP_075751803.1 redox-regulated ATPase YchF -
  H2R00_RS15170 rpsF 3056888..3057175 (+) 288 WP_020453642.1 30S ribosomal protein S6 -
  H2R00_RS15175 ssbA 3057222..3057734 (+) 513 WP_154996095.1 single-stranded DNA-binding protein SsbA Machinery gene
  H2R00_RS15180 rpsR 3057783..3058022 (+) 240 WP_003178022.1 30S ribosomal protein S18 -
  H2R00_RS15185 - 3058100..3059401 (-) 1302 WP_182069627.1 MFS transporter -
  H2R00_RS15190 - 3059618..3061084 (+) 1467 WP_154996091.1 SulP family inorganic anion transporter -
  H2R00_RS15195 - 3061102..3061521 (+) 420 WP_154996089.1 universal stress protein -
  H2R00_RS15200 - 3061565..3062041 (-) 477 WP_154996087.1 spore coat protein -
  H2R00_RS15205 - 3062201..3062341 (+) 141 WP_244958243.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18400.04 Da        Isoelectric Point: 4.9367

>NTDB_id=470079 H2R00_RS15175 WP_154996095.1 3057222..3057734(+) (ssbA) [Bacillus haynesii strain P19]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
SYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQHFGGGQNEPAPFGGNQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=470079 H2R00_RS15175 WP_154996095.1 3057222..3057734(+) (ssbA) [Bacillus haynesii strain P19]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACTCCTAGCGGTGCAGCTGTTGC
CACCTTTACGCTTGCTGTCAATCGTACGTTTACGAATCAGCAGGGTGAACGTGAAGCTGATTTCATCAACTGTGTTGTCT
GGAGAAGACAAGCCGAAAACGTTGCAAATTTCCTTAAAAAAGGAAGTCTTGCGGGTGTAGATGGACGTTTGCAAACGCGC
AGCTATGAAAATCAGCAGGGACAGCGTGTATACGTCACGGAAGTTCAAGCTGAAAGTGTTCAATTTCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAACACTTTGGCGGCGGACAGAATGAACCGGCTCCAT
TCGGCGGCAATCAAAACAATCAGAATCGCAATCAAGGCAACAGCTTCAATGACGATCCATTCGCAAACGATGGAAAGCCG
ATTGACATCTCTGATGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

84.884

100

0.859
  ssb Latilactobacillus sakei subsp. sakei 23K

58.96

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

62.353

0.406
  ssb Glaesserella parasuis strain SC1401

35.87

100

0.388