Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   H1D55_RS14815 Genome accession   NZ_CP059474
Coordinates   3175553..3175963 (+) Length   136 a.a.
NCBI ID   WP_001200144.1    Uniprot ID   A0A6F8TJU0
Organism   Acinetobacter baumannii strain M175-3     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3170553..3180963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1D55_RS14800 - 3171542..3173848 (+) 2307 WP_000259109.1 RelA/SpoT family protein -
  H1D55_RS14805 - 3173893..3174666 (-) 774 WP_000682841.1 SDR family oxidoreductase -
  H1D55_RS14810 mazG 3174778..3175584 (+) 807 WP_000359488.1 nucleoside triphosphate pyrophosphohydrolase -
  H1D55_RS14815 comEA 3175553..3175963 (+) 411 WP_001200144.1 ComEA family DNA-binding protein Machinery gene
  H1D55_RS14820 pcnB 3176088..3177551 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  H1D55_RS14825 folK 3177548..3178030 (+) 483 WP_000219224.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  H1D55_RS14830 panB 3178076..3178885 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  H1D55_RS14835 panC 3178889..3179737 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  H1D55_RS14840 rapZ 3179760..3180611 (+) 852 WP_000821671.1 RNase adapter RapZ -
  H1D55_RS14845 - 3180608..3180877 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15747.09 Da        Isoelectric Point: 10.4475

>NTDB_id=469949 H1D55_RS14815 WP_001200144.1 3175553..3175963(+) (comEA) [Acinetobacter baumannii strain M175-3]
MQYSMRFWKNKYFILIMLCLGVVSPSVYAQSFDQNFQEWKAKQQMYDQKLKITKSSHSNGSKISQTKNFNDFTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=469949 H1D55_RS14815 WP_001200144.1 3175553..3175963(+) (comEA) [Acinetobacter baumannii strain M175-3]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTATTTTAATAATGTTGTGCTTGGGAGTAGTTTCACCTTCAGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAAGATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTTTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TJU0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baumannii D1279779

93.382

100

0.934
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404