Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   H1R75_RS08495 Genome accession   NZ_CP059471
Coordinates   1671979..1672485 (-) Length   168 a.a.
NCBI ID   WP_024343575.1    Uniprot ID   A0A239R6S2
Organism   Streptococcus equinus strain MDC1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1666979..1677485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H1R75_RS08465 (H1R75_08465) - 1668391..1669335 (+) 945 WP_024343577.1 magnesium transporter CorA family protein -
  H1R75_RS08470 (H1R75_08470) - 1669667..1670323 (+) 657 WP_021143092.1 DUF1129 domain-containing protein -
  H1R75_RS08475 (H1R75_08475) - 1670363..1670797 (-) 435 WP_235686231.1 hypothetical protein -
  H1R75_RS08480 (H1R75_08480) - 1670781..1671005 (-) 225 WP_074668623.1 helix-turn-helix domain-containing protein -
  H1R75_RS08485 (H1R75_08485) - 1671007..1671531 (-) 525 WP_182001360.1 DUF2975 domain-containing protein -
  H1R75_RS08490 (H1R75_08490) rpsR 1671680..1671919 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  H1R75_RS08495 (H1R75_08495) ssbA 1671979..1672485 (-) 507 WP_024343575.1 single-stranded DNA-binding protein Machinery gene
  H1R75_RS08500 (H1R75_08500) rpsF 1672497..1672787 (-) 291 WP_004233201.1 30S ribosomal protein S6 -
  H1R75_RS08505 (H1R75_08505) - 1672996..1673142 (-) 147 WP_234704413.1 ATP-dependent protease -
  H1R75_RS08510 (H1R75_08510) - 1673334..1674272 (-) 939 WP_413251977.1 class C sortase -
  H1R75_RS08515 (H1R75_08515) - 1674369..1675748 (-) 1380 WP_182001362.1 SpaA isopeptide-forming pilin-related protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18570.24 Da        Isoelectric Point: 4.9008

>NTDB_id=469848 H1R75_RS08495 WP_024343575.1 1671979..1672485(-) (ssbA) [Streptococcus equinus strain MDC1]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLIGVTGRIQTR
NYENQQGQRVYVTEIVADSFQILESRATREGQSGGSYNGGFNNNSSFGGSSNGGFSSQPSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=469848 H1R75_RS08495 WP_024343575.1 1671979..1672485(-) (ssbA) [Streptococcus equinus strain MDC1]
ATGATTAATAATGTAGTACTTGTTGGTCGTATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAACCAAAATGGTGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGTCAGCAAGCTGAAAACTTAGCTAACTGGGCTAAAAAAGGTACATTGATTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAGCGCGTTTACGTAACTGAGATTGTTGCAGATAGCTTCCAAATCTTGGAAAGCCGTGC
TACACGTGAAGGACAATCTGGTGGTTCTTACAATGGTGGATTCAATAACAATTCATCATTTGGTGGATCTTCAAACGGTG
GTTTCTCATCACAACCTTCACAACAAACACCTAATTTCGGTCGTGACGAAAGCCCATTTGGGAACTCAAACCCAATGGAC
ATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A239R6S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.659

100

0.625
  ssb Latilactobacillus sakei subsp. sakei 23K

60

100

0.607
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

64.881

0.363