Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HP2017_RS00195 | Genome accession | NC_017374 |
| Coordinates | 35313..35426 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217877.1 | Uniprot ID | A0A1A9H2U2 |
| Organism | Helicobacter pylori 2017 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 30313..40426
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HP2017_RS00170 (hp2017_0034) | - | 30354..32582 (+) | 2229 | WP_000357209.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| HP2017_RS00175 (hp2017_0035) | panD | 32572..32925 (+) | 354 | WP_000142275.1 | aspartate 1-decarboxylase | - |
| HP2017_RS00180 (hp2017_0036) | - | 32928..33230 (+) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HP2017_RS00185 (hp2017_0037) | - | 33230..34234 (+) | 1005 | WP_000965841.1 | PDZ domain-containing protein | - |
| HP2017_RS00190 (hp2017_0038) | comB6 | 34242..35297 (+) | 1056 | WP_000679716.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HP2017_RS00195 (hp2017_0039) | comB7 | 35313..35426 (+) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| HP2017_RS00200 (hp2017_0040) | comB8 | 35423..36166 (+) | 744 | WP_000660538.1 | virB8 family protein | Machinery gene |
| HP2017_RS00205 (hp2017_0041) | comB9 | 36166..37152 (+) | 987 | WP_014536255.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HP2017_RS00210 (hp2017_0042) | comB10 | 37145..38275 (+) | 1131 | WP_001045760.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HP2017_RS00215 (hp2017_0043) | - | 38345..39757 (+) | 1413 | WP_000694991.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4291.23 Da Isoelectric Point: 9.3572
>NTDB_id=46976 HP2017_RS00195 WP_001217877.1 35313..35426(+) (comB7) [Helicobacter pylori 2017]
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=46976 HP2017_RS00195 WP_001217877.1 35313..35426(+) (comB7) [Helicobacter pylori 2017]
ATGAGGATTTTTTTTGTTATTATGGGACTTGTGCTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAGAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGGATTTTTTTTGTTATTATGGGACTTGTGCTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAGAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
97.297 |
100 |
0.973 |