Detailed information NTG0046978

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HP2017_RS00205
• Genome accession: NC_017374
• Coordinates: 36166..37152 (+)
• Length: 328 a.a.
• NCBI ID: WP_014536255.1
• Uniprot ID: -
• Organism: Helicobacter pylori 2017
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31166..42152

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HP2017_RS00175 (hp2017_0035)	panD	32572..32925 (+)	354	WP_000142275.1	aspartate 1-decarboxylase	-
HP2017_RS00180 (hp2017_0036)	-	32928..33230 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HP2017_RS00185 (hp2017_0037)	-	33230..34234 (+)	1005	WP_000965841.1	PDZ domain-containing protein	-
HP2017_RS00190 (hp2017_0038)	comB6	34242..35297 (+)	1056	WP_000679716.1	P-type conjugative transfer protein TrbL	Machinery gene
HP2017_RS00195 (hp2017_0039)	comB7	35313..35426 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
HP2017_RS00200 (hp2017_0040)	comB8	35423..36166 (+)	744	WP_000660538.1	virB8 family protein	Machinery gene
HP2017_RS00205 (hp2017_0041)	comB9	36166..37152 (+)	987	WP_014536255.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HP2017_RS00210 (hp2017_0042)	comB10	37145..38275 (+)	1131	WP_001045760.1	DNA type IV secretion system protein ComB10	Machinery gene
HP2017_RS00215 (hp2017_0043)	-	38345..39757 (+)	1413	WP_000694991.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HP2017_RS00220 (hp2017_0044)	gmd	39798..40943 (+)	1146	WP_000659866.1	GDP-mannose 4,6-dehydratase	-
HP2017_RS00225 (hp2017_0045)	-	40936..41868 (+)	933	WP_001002465.1	GDP-L-fucose synthase	-
HP2017_RS08315	-	41896..42074 (-)	179	Protein_39	anthranilate synthase component I	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37942.77 Da
• Isoelectric Point: 9.6350

>NTDB_id=46978 HP2017_RS00205 WP_014536255.1 36166..37152(+) (comB9) [Helicobacter pylori 2017]
MRKVLYALMGFLLAFSVLKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMAENAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQRKWYCL
WACSKKSKLSLMPKEIFNDKQFTYFKFDKRLVLSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIR
FVKRSKGE

Nucleotide

• Length: 987 bp

>NTDB_id=46978 HP2017_RS00205 WP_014536255.1 36166..37152(+) (comB9) [Helicobacter pylori 2017]
ATGCGTAAGGTTTTATACGCTCTCATGGGTTTTTTGTTGGCTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTATTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
CAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCTAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCAAAA
AAATAATAAGCCCCTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACCA
ACGCGATGAAAATTATTAAAAAAGACATCCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTA
TGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATT
TGACAAAAGATTAGTGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAATCCGGTGAATACAAGGA
TTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGTAAGGATTATCTGTGTATCCGT
TTTGTCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-319)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.683	100	0.927