Detailed information NTG0046975

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HP2017_RS00190
• Genome accession: NC_017374
• Coordinates: 34242..35297 (+)
• Length: 351 a.a.
• NCBI ID: WP_000679716.1
• Uniprot ID: -
• Organism: Helicobacter pylori 2017
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29242..40297

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HP2017_RS00160 (hp2017_0032)	-	29664..30077 (+)	414	WP_001023005.1	universal stress protein	-
HP2017_RS00165 (hp2017_0033)	-	30079..30354 (+)	276	WP_000781793.1	ATP-dependent Clp protease adaptor ClpS	-
HP2017_RS00170 (hp2017_0034)	-	30354..32582 (+)	2229	WP_000357209.1	ATP-dependent Clp protease ATP-binding subunit	-
HP2017_RS00175 (hp2017_0035)	panD	32572..32925 (+)	354	WP_000142275.1	aspartate 1-decarboxylase	-
HP2017_RS00180 (hp2017_0036)	-	32928..33230 (+)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HP2017_RS00185 (hp2017_0037)	-	33230..34234 (+)	1005	WP_000965841.1	PDZ domain-containing protein	-
HP2017_RS00190 (hp2017_0038)	comB6	34242..35297 (+)	1056	WP_000679716.1	P-type conjugative transfer protein TrbL	Machinery gene
HP2017_RS00195 (hp2017_0039)	comB7	35313..35426 (+)	114	WP_001217877.1	hypothetical protein	Machinery gene
HP2017_RS00200 (hp2017_0040)	comB8	35423..36166 (+)	744	WP_000660538.1	virB8 family protein	Machinery gene
HP2017_RS00205 (hp2017_0041)	comB9	36166..37152 (+)	987	WP_014536255.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HP2017_RS00210 (hp2017_0042)	comB10	37145..38275 (+)	1131	WP_001045760.1	DNA type IV secretion system protein ComB10	Machinery gene
HP2017_RS00215 (hp2017_0043)	-	38345..39757 (+)	1413	WP_000694991.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39631.50 Da
• Isoelectric Point: 8.8283

>NTDB_id=46975 HP2017_RS00190 WP_000679716.1 34242..35297(+) (comB6) [Helicobacter pylori 2017]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNH
ALKNPSRFYELFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVGLFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLTQSALQSLQYTTTSPAPSPISTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTIDTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=46975 HP2017_RS00190 WP_000679716.1 34242..35297(+) (comB6) [Helicobacter pylori 2017]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTTTTTGCTTACAGGAGTT
TGAAAGAGCAGAATTTTTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTCGCACTGTTTAACCAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATCTTTATTGCACCTAACATGATCGCACAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCACTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGCT
TCATCAGCGATTTGAGTCATAACGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGCCTTAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCCTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGGGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCACTCAAAGCGCTTTGCAATCTTTACAATATACCA
CAACCTCGCCCGCTCCCTCTCCTATTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAGGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAGATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	92.023	100	0.92