Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPIN_RS08575 | Genome accession | NC_017372 |
| Coordinates | 37224..37316 (+) | Length | 30 a.a. |
| NCBI ID | WP_000524813.1 | Uniprot ID | - |
| Organism | Helicobacter pylori India7 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 32224..42316
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPIN_RS00175 (HPIN_00150) | - | 32257..34482 (+) | 2226 | WP_001051479.1 | AAA family ATPase | - |
| HPIN_RS00180 (HPIN_00155) | panD | 34472..34825 (+) | 354 | WP_000142217.1 | aspartate 1-decarboxylase | - |
| HPIN_RS00185 (HPIN_00160) | - | 34828..35130 (+) | 303 | WP_000347927.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPIN_RS00190 (HPIN_00165) | - | 35130..36125 (+) | 996 | WP_000902470.1 | PDZ domain-containing protein | - |
| HPIN_RS00195 (HPIN_00170) | comB6 | 36133..37188 (+) | 1056 | WP_000679752.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPIN_RS08575 | comB7 | 37224..37316 (+) | 93 | WP_000524813.1 | hypothetical protein | Machinery gene |
| HPIN_RS00205 (HPIN_00175) | comB8 | 37313..38050 (+) | 738 | WP_000660571.1 | type IV secretion system protein | Machinery gene |
| HPIN_RS00210 (HPIN_00180) | comB9 | 38050..39015 (+) | 966 | WP_014536042.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPIN_RS00215 (HPIN_00185) | comB10 | 39008..40144 (+) | 1137 | WP_001045887.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPIN_RS00220 (HPIN_00190) | - | 40214..41632 (+) | 1419 | WP_000694843.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 30 a.a. Molecular weight: 3418.07 Da Isoelectric Point: 8.5423
>NTDB_id=46971 HPIN_RS08575 WP_000524813.1 37224..37316(+) (comB7) [Helicobacter pylori India7]
MGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 93 bp
>NTDB_id=46971 HPIN_RS08575 WP_000524813.1 37224..37316(+) (comB7) [Helicobacter pylori India7]
ATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTGCACATTGTATGAAAACAGGTT
AAATCTCGCATGA
ATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTGCACATTGTATGAAAACAGGTT
AAATCTCGCATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |