Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GZ984_RS05495 Genome accession   NZ_CP059445
Coordinates   1108838..1109605 (-) Length   255 a.a.
NCBI ID   WP_002849743.1    Uniprot ID   -
Organism   Campylobacter fetus strain CFF09A980     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1103838..1114605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ984_RS05465 (GZ984_005465) tatB 1104130..1104585 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  GZ984_RS05470 (GZ984_005470) tatC 1104585..1105340 (+) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  GZ984_RS05475 (GZ984_005475) queA 1105337..1106356 (+) 1020 WP_002849734.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  GZ984_RS05480 (GZ984_005480) - 1106366..1107610 (+) 1245 WP_011732089.1 hypothetical protein -
  GZ984_RS05485 (GZ984_005485) - 1107596..1108459 (-) 864 WP_002849738.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GZ984_RS05490 (GZ984_005490) dprB 1108467..1108841 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  GZ984_RS05495 (GZ984_005495) dprA 1108838..1109605 (-) 768 WP_002849743.1 DNA-processing protein DprA Machinery gene
  GZ984_RS05500 (GZ984_005500) - 1109589..1110752 (-) 1164 WP_011732090.1 divergent polysaccharide deacetylase family protein -
  GZ984_RS05505 (GZ984_005505) ilvC 1110753..1111775 (-) 1023 WP_011732091.1 ketol-acid reductoisomerase -
  GZ984_RS05510 (GZ984_005510) - 1111922..1112734 (+) 813 WP_011732092.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28365.52 Da        Isoelectric Point: 5.8689

>NTDB_id=469647 GZ984_RS05495 WP_002849743.1 1108838..1109605(-) (dprA) [Campylobacter fetus strain CFF09A980]
MDFITDILSLKKLKKPVNKLYYKGNLELLNFPKVAIVGSRKCTSYTKNIVLSLASTLKNYGICVVSGAAIGTDIHAHEGA
FPNTIAVFGNGLNNIYPAQNSKMIEKIYKDALALSEYEPNTFATPWSFLERNRIVVSLSDAVIIAEADIKSGSMSSARLA
LDMGIPLFVLPQRFNESNGTNDLLSKNRANLIADFDEFASKFGSLNSDLSKDDVLEFIKINQNFDECYARFGDALYEYEL
EGKISIDRVYIRILS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=469647 GZ984_RS05495 WP_002849743.1 1108838..1109605(-) (dprA) [Campylobacter fetus strain CFF09A980]
ATGGACTTTATAACTGATATTTTAAGCTTAAAAAAGCTAAAAAAACCTGTAAATAAACTATACTATAAAGGAAATTTAGA
ACTCTTAAATTTCCCCAAAGTAGCGATAGTCGGCTCGAGAAAATGTACTTCTTATACAAAAAATATTGTTTTGAGTTTAG
CCTCTACTCTTAAAAATTACGGTATTTGCGTAGTTAGCGGAGCGGCTATAGGTACCGATATACATGCTCACGAAGGCGCT
TTTCCAAATACCATCGCAGTCTTTGGAAATGGACTTAATAATATATATCCGGCTCAAAACTCAAAAATGATAGAAAAAAT
TTATAAAGACGCATTGGCTCTTAGCGAGTATGAACCTAATACTTTTGCGACTCCTTGGAGTTTTTTAGAAAGAAACAGAA
TAGTCGTATCTCTAAGCGACGCCGTGATCATAGCAGAAGCGGATATTAAAAGCGGATCAATGTCTAGCGCAAGACTCGCT
TTGGATATGGGAATTCCTCTTTTTGTATTGCCTCAAAGGTTTAATGAGAGCAATGGAACAAATGATCTACTTAGTAAAAA
TAGGGCGAATTTAATAGCCGATTTTGATGAGTTTGCTTCTAAATTCGGAAGTTTAAACAGTGATTTGAGTAAAGACGATG
TTTTGGAATTTATAAAAATAAATCAAAACTTTGATGAGTGTTACGCGAGATTTGGAGACGCTTTGTATGAATACGAGCTG
GAGGGTAAAATTTCTATAGACAGAGTATATATAAGGATTTTATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.745

92.157

0.514
  dprA Helicobacter pylori 26695

47.917

94.118

0.451