Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   GZ984_RS05490 Genome accession   NZ_CP059445
Coordinates   1108467..1108841 (-) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus strain CFF09A980     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1103467..1113841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZ984_RS05465 (GZ984_005465) tatB 1104130..1104585 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  GZ984_RS05470 (GZ984_005470) tatC 1104585..1105340 (+) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  GZ984_RS05475 (GZ984_005475) queA 1105337..1106356 (+) 1020 WP_002849734.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  GZ984_RS05480 (GZ984_005480) - 1106366..1107610 (+) 1245 WP_011732089.1 hypothetical protein -
  GZ984_RS05485 (GZ984_005485) - 1107596..1108459 (-) 864 WP_002849738.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  GZ984_RS05490 (GZ984_005490) dprB 1108467..1108841 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  GZ984_RS05495 (GZ984_005495) dprA 1108838..1109605 (-) 768 WP_002849743.1 DNA-processing protein DprA Machinery gene
  GZ984_RS05500 (GZ984_005500) - 1109589..1110752 (-) 1164 WP_011732090.1 divergent polysaccharide deacetylase family protein -
  GZ984_RS05505 (GZ984_005505) ilvC 1110753..1111775 (-) 1023 WP_011732091.1 ketol-acid reductoisomerase -
  GZ984_RS05510 (GZ984_005510) - 1111922..1112734 (+) 813 WP_011732092.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=469646 GZ984_RS05490 WP_002849740.1 1108467..1108841(-) (dprB) [Campylobacter fetus strain CFF09A980]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=469646 GZ984_RS05490 WP_002849740.1 1108467..1108841(-) (dprB) [Campylobacter fetus strain CFF09A980]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGCGAACTGTCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524