Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   FOLKNPGA_RS13695 Genome accession   NZ_CP059400
Coordinates   3136167..3136592 (+) Length   141 a.a.
NCBI ID   WP_182350425.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3131167..3141592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS13670 (FOLKNPGA_02776) - 3132141..3133133 (+) 993 WP_232891287.1 polysaccharide deacetylase family protein -
  FOLKNPGA_RS13675 (FOLKNPGA_02777) fimT 3133379..3133903 (+) 525 WP_182350421.1 GspH/FimT family protein Machinery gene
  FOLKNPGA_RS13680 (FOLKNPGA_02778) pilV 3133916..3134458 (+) 543 WP_182350422.1 type IV pilus modification protein PilV -
  FOLKNPGA_RS13685 (FOLKNPGA_02779) - 3134455..3135522 (+) 1068 WP_182350423.1 PilW family protein -
  FOLKNPGA_RS13690 (FOLKNPGA_02780) - 3135636..3136157 (+) 522 WP_232891309.1 pilus assembly protein -
  FOLKNPGA_RS13695 (FOLKNPGA_02781) pilE 3136167..3136592 (+) 426 WP_182350425.1 type IV pilin protein Machinery gene
  FOLKNPGA_RS13700 (FOLKNPGA_02782) comEC 3136686..3138902 (+) 2217 WP_182350426.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FOLKNPGA_RS13705 (FOLKNPGA_02783) - 3139078..3140115 (+) 1038 WP_182350427.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  FOLKNPGA_RS13710 (FOLKNPGA_02784) - 3140212..3141015 (-) 804 WP_182350428.1 hypothetical protein -
  FOLKNPGA_RS13715 (FOLKNPGA_02785) - 3141108..3141389 (-) 282 WP_182350429.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15173.27 Da        Isoelectric Point: 4.9098

>NTDB_id=469390 FOLKNPGA_RS13695 WP_182350425.1 3136167..3136592(+) (pilE) [Legionella sp. PC1000]
MMNNARKHGFTLIEVMIAVLIIGILATIAYPSYVSFVLKSRRSDAMATLAQDQIILERCYSQNFSYNAPCASLPPFPQTS
AQGFYSITLSNVGATTYTLTATPIGSQAEDETCASMTVDQSNAKTAVDSSGIAQTICWNPT

Nucleotide


Download         Length: 426 bp        

>NTDB_id=469390 FOLKNPGA_RS13695 WP_182350425.1 3136167..3136592(+) (pilE) [Legionella sp. PC1000]
ATGATGAATAATGCACGAAAACACGGATTCACCTTAATTGAAGTAATGATAGCCGTACTTATTATAGGCATACTGGCTAC
AATTGCCTATCCTTCCTATGTCAGTTTCGTGCTCAAATCACGTCGTTCAGATGCGATGGCCACATTAGCACAAGATCAGA
TCATTCTGGAACGGTGTTATTCACAAAACTTTTCTTATAACGCTCCTTGTGCCTCGTTACCTCCATTTCCGCAAACATCG
GCTCAAGGTTTCTACAGTATAACCTTATCTAATGTAGGAGCTACAACATATACACTCACAGCAACACCAATTGGGAGCCA
GGCGGAAGATGAAACCTGTGCCAGCATGACAGTAGATCAATCGAACGCAAAAACCGCAGTAGATTCATCAGGAATTGCAC
AAACCATTTGTTGGAATCCGACATAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Legionella pneumophila str. Paris

63.38

100

0.638
  pilE Legionella pneumophila strain ERS1305867

63.38

100

0.638