Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   FOLKNPGA_RS13675 Genome accession   NZ_CP059400
Coordinates   3133379..3133903 (+) Length   174 a.a.
NCBI ID   WP_182350421.1    Uniprot ID   -
Organism   Legionella sp. PC1000     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3128379..3138903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS13660 (FOLKNPGA_02774) - 3128863..3130365 (-) 1503 WP_182350419.1 glycosyltransferase family 39 protein -
  FOLKNPGA_RS13665 (FOLKNPGA_02775) - 3130696..3131985 (+) 1290 WP_182350420.1 hypothetical protein -
  FOLKNPGA_RS13670 (FOLKNPGA_02776) - 3132141..3133133 (+) 993 WP_232891287.1 polysaccharide deacetylase family protein -
  FOLKNPGA_RS13675 (FOLKNPGA_02777) fimT 3133379..3133903 (+) 525 WP_182350421.1 GspH/FimT family protein Machinery gene
  FOLKNPGA_RS13680 (FOLKNPGA_02778) pilV 3133916..3134458 (+) 543 WP_182350422.1 type IV pilus modification protein PilV -
  FOLKNPGA_RS13685 (FOLKNPGA_02779) - 3134455..3135522 (+) 1068 WP_182350423.1 PilW family protein -
  FOLKNPGA_RS13690 (FOLKNPGA_02780) - 3135636..3136157 (+) 522 WP_232891309.1 pilus assembly protein -
  FOLKNPGA_RS13695 (FOLKNPGA_02781) pilE 3136167..3136592 (+) 426 WP_182350425.1 type IV pilin protein Machinery gene
  FOLKNPGA_RS13700 (FOLKNPGA_02782) comEC 3136686..3138902 (+) 2217 WP_182350426.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18291.06 Da        Isoelectric Point: 7.6099

>NTDB_id=469389 FOLKNPGA_RS13675 WP_182350421.1 3133379..3133903(+) (fimT) [Legionella sp. PC1000]
MPAKKTAFTLIELLVTLLVLCVTLVIAIPFLSGMLMNNRLIAYTDMFVNALNYARHSALNGSMNVIVCPFGAPQSTTCGG
SWNAGWIVATQPTVGASTLLKSQQLSPSDPVLSGNVANVVFDSHGVTTTPSNFKFCDSRGGAFGRSVEVLATGYVQSSTT
PGQAVWDNSALTCP

Nucleotide


Download         Length: 525 bp        

>NTDB_id=469389 FOLKNPGA_RS13675 WP_182350421.1 3133379..3133903(+) (fimT) [Legionella sp. PC1000]
ATGCCAGCTAAAAAGACAGCGTTCACCTTAATTGAACTTTTGGTGACCTTATTGGTACTTTGCGTCACTTTGGTTATAGC
AATTCCCTTCTTAAGCGGTATGCTTATGAATAATCGCCTAATAGCTTATACAGATATGTTTGTGAACGCGCTTAATTATG
CGCGCCACAGCGCGCTTAACGGATCAATGAACGTCATAGTTTGCCCCTTCGGGGCACCACAATCCACCACTTGTGGCGGA
AGTTGGAACGCCGGATGGATAGTAGCAACCCAACCCACAGTAGGTGCAAGCACCTTATTGAAAAGCCAGCAACTTTCACC
TTCAGATCCTGTCCTTTCAGGCAACGTTGCAAATGTAGTCTTTGATTCTCATGGAGTGACTACTACTCCAAGTAATTTTA
AATTTTGTGACAGCAGAGGAGGAGCATTTGGACGTTCTGTAGAAGTATTGGCCACTGGATATGTCCAATCAAGTACCACA
CCCGGACAAGCCGTTTGGGATAACAGTGCGCTTACATGCCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)

Type II transport protein GspH (GspH)

(46-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Legionella pneumophila strain Lp02

57.803

99.425

0.575