Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   FOLKNPGA_RS03590 Genome accession   NZ_CP059400
Coordinates   828182..829255 (+) Length   357 a.a.
NCBI ID   WP_182351786.1    Uniprot ID   A0A7G3ZXE2
Organism   Legionella sp. PC1000     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 823182..834255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOLKNPGA_RS03570 (FOLKNPGA_00730) rsmB 824048..825331 (-) 1284 WP_182351782.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  FOLKNPGA_RS03575 (FOLKNPGA_00731) fmt 825328..826272 (-) 945 WP_182351783.1 methionyl-tRNA formyltransferase -
  FOLKNPGA_RS03580 (FOLKNPGA_00732) def 826547..827056 (-) 510 WP_182351784.1 peptide deformylase -
  FOLKNPGA_RS03585 (FOLKNPGA_00733) - 827148..828185 (+) 1038 WP_182351785.1 LysM peptidoglycan-binding domain-containing protein -
  FOLKNPGA_RS03590 (FOLKNPGA_00734) dprA 828182..829255 (+) 1074 WP_182351786.1 DNA-processing protein DprA Machinery gene
  FOLKNPGA_RS03595 (FOLKNPGA_00735) - 829259..829696 (+) 438 WP_182351787.1 DUF494 family protein -
  FOLKNPGA_RS03600 (FOLKNPGA_00736) topA 829936..832221 (+) 2286 WP_182351788.1 type I DNA topoisomerase -
  FOLKNPGA_RS03605 (FOLKNPGA_00737) - 832647..832877 (-) 231 WP_232890556.1 hypothetical protein -

Sequence


Protein


Download         Length: 357 a.a.        Molecular weight: 38447.28 Da        Isoelectric Point: 6.4926

>NTDB_id=469369 FOLKNPGA_RS03590 WP_182351786.1 828182..829255(+) (dprA) [Legionella sp. PC1000]
MNNLSCYLALNRMERVGPRTAGKLQKRWPDLQHMFQLSAVELEQAGLPSALAQTIAGFDLSLVQEDLSWLEAADDHHILT
WDSPEYPSLLKEITDPPIVLYAKGQLSCLKQPTLAVVGSRNPTVTGSENARQFAKAIASHGVTIVSGLALGVDAQAHLGC
LEAGGQTIAVLGTGIDRIYPHRHKALSQQIAQNGLLVSEFSLKSPPIAGHFPRRNRIISGLSLCTLVVESAIKSGSLITA
RMALEQNRDVLAIPGSIHNPLARGCHYLLQQGAKLVTSVVDVLEELQIDSEQQTADKAILPLASGNKNLVKFIGFEMTTV
DQIILRSGCTVEQVLSELAELELNGAVVSVPGGYMRC

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=469369 FOLKNPGA_RS03590 WP_182351786.1 828182..829255(+) (dprA) [Legionella sp. PC1000]
ATGAATAATTTATCCTGTTACCTCGCATTAAACCGAATGGAAAGAGTGGGGCCGCGTACGGCAGGCAAACTACAAAAGCG
TTGGCCTGATTTACAACACATGTTCCAGCTTTCAGCAGTTGAGCTGGAACAAGCAGGTCTACCCTCTGCTTTGGCACAAA
CGATAGCTGGTTTTGATTTGAGCTTAGTGCAAGAAGATCTCAGCTGGTTGGAGGCTGCAGACGATCATCATATACTCACT
TGGGATTCGCCTGAGTATCCCTCTTTATTGAAAGAAATTACGGATCCTCCTATCGTTTTATATGCAAAAGGACAGCTTTC
CTGTTTAAAGCAACCTACATTAGCTGTAGTAGGTAGTCGCAATCCTACTGTAACTGGGAGTGAAAACGCACGGCAATTTG
CAAAAGCAATCGCATCCCATGGCGTTACTATTGTAAGTGGCTTGGCACTAGGTGTGGACGCCCAGGCTCATCTAGGATGT
TTGGAGGCAGGAGGGCAAACAATAGCGGTTTTAGGTACGGGAATCGATCGAATATACCCTCATCGGCATAAGGCATTATC
GCAACAAATTGCTCAAAATGGTTTGTTAGTGAGCGAATTTTCCTTAAAAAGTCCACCGATCGCTGGACATTTCCCTAGAA
GAAATCGTATAATAAGTGGTTTATCATTGTGCACTTTGGTTGTTGAGTCGGCAATCAAAAGTGGTTCGTTAATCACAGCA
CGAATGGCCTTGGAACAAAACCGGGATGTTTTAGCAATCCCTGGCTCCATTCACAATCCTCTGGCTCGAGGGTGCCATTA
CCTGTTACAGCAAGGAGCCAAATTAGTTACCTCAGTTGTTGATGTTCTCGAGGAGTTACAGATTGATTCAGAACAACAAA
CAGCTGATAAAGCTATTTTACCTCTTGCCAGCGGGAATAAAAACCTAGTAAAGTTCATTGGCTTTGAAATGACAACTGTT
GATCAGATCATTTTACGTAGTGGATGCACCGTTGAGCAAGTCCTTAGTGAGCTTGCAGAATTAGAATTAAATGGGGCTGT
AGTTTCTGTGCCCGGTGGCTATATGAGGTGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A7G3ZXE2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Legionella pneumophila strain ERS1305867

74.51

100

0.745

  dprA Vibrio campbellii strain DS40M4

44.932

100

0.459

  dprA Glaesserella parasuis strain SC1401

39.733

100

0.417

  dprA Vibrio cholerae strain A1552

46.667

84.034

0.392