Detailed information NTG0046919

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPF16_RS06580
• Genome accession: NC_017368
• Coordinates: 1343315..1344277 (-)
• Length: 320 a.a.
• NCBI ID: WP_014535885.1
• Uniprot ID: -
• Organism: Helicobacter pylori F16
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1338315..1349277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPF16_RS06560 (HPF16_1277)	-	1338619..1339551 (-)	933	WP_001002521.1	GDP-L-fucose synthase family protein	-
HPF16_RS06565 (HPF16_1278)	gmd	1339544..1340689 (-)	1146	WP_000659852.1	GDP-mannose 4,6-dehydratase	-
HPF16_RS06570 (HPF16_1279)	-	1340713..1342116 (-)	1404	WP_000694849.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPF16_RS06575 (HPF16_1280)	comB10	1342186..1343322 (-)	1137	WP_001045778.1	DNA type IV secretion system protein ComB10	Machinery gene
HPF16_RS06580 (HPF16_1281)	comB9	1343315..1344277 (-)	963	WP_014535885.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPF16_RS06585 (HPF16_1282)	comB8	1344277..1345020 (-)	744	WP_000660524.1	type IV secretion system protein	Machinery gene
HPF16_RS06590	comB7	1345017..1345142 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPF16_RS06595 (HPF16_1283)	comB6	1345158..1346213 (-)	1056	WP_000786708.1	P-type conjugative transfer protein TrbL	Machinery gene
HPF16_RS06600 (HPF16_1284)	-	1346219..1347214 (-)	996	WP_000468437.1	PDZ domain-containing protein	-
HPF16_RS06605 (HPF16_1285)	-	1347214..1347507 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
HPF16_RS06610 (HPF16_1286)	panD	1347518..1347868 (-)	351	WP_000142207.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36856.45 Da
• Isoelectric Point: 9.3498

>NTDB_id=46919 HPF16_RS06580 WP_014535885.1 1343315..1344277(-) (comB9) [Helicobacter pylori F16]
MRKVLYALVGFLLAFSALKADDFLEEANETVPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKRGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=46919 HPF16_RS06580 WP_014535885.1 1343315..1344277(-) (comB9) [Helicobacter pylori F16]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGTCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATATTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAATTCAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACGAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTCAACGACAAGCAATTCACCTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTATATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGCAAGGACTATTTGTGTATCCGTTTTATCAAAAGGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.718	100	0.934