Detailed information NTG0046922

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPF16_RS06595
• Genome accession: NC_017368
• Coordinates: 1345158..1346213 (-)
• Length: 351 a.a.
• NCBI ID: WP_000786708.1
• Uniprot ID: -
• Organism: Helicobacter pylori F16
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1340158..1351213

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPF16_RS06570 (HPF16_1279)	-	1340713..1342116 (-)	1404	WP_000694849.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPF16_RS06575 (HPF16_1280)	comB10	1342186..1343322 (-)	1137	WP_001045778.1	DNA type IV secretion system protein ComB10	Machinery gene
HPF16_RS06580 (HPF16_1281)	comB9	1343315..1344277 (-)	963	WP_014535885.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPF16_RS06585 (HPF16_1282)	comB8	1344277..1345020 (-)	744	WP_000660524.1	type IV secretion system protein	Machinery gene
HPF16_RS06590	comB7	1345017..1345142 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
HPF16_RS06595 (HPF16_1283)	comB6	1345158..1346213 (-)	1056	WP_000786708.1	P-type conjugative transfer protein TrbL	Machinery gene
HPF16_RS06600 (HPF16_1284)	-	1346219..1347214 (-)	996	WP_000468437.1	PDZ domain-containing protein	-
HPF16_RS06605 (HPF16_1285)	-	1347214..1347507 (-)	294	WP_000347923.1	YbaB/EbfC family nucleoid-associated protein	-
HPF16_RS06610 (HPF16_1286)	panD	1347518..1347868 (-)	351	WP_000142207.1	aspartate 1-decarboxylase	-
HPF16_RS06615 (HPF16_1287)	-	1347858..1350080 (-)	2223	WP_001051528.1	AAA family ATPase	-
HPF16_RS06620 (HPF16_1288)	-	1350080..1350355 (-)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
HPF16_RS06625 (HPF16_1289)	-	1350369..1350782 (-)	414	WP_001022995.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39972.00 Da
• Isoelectric Point: 8.8165

>NTDB_id=46922 HPF16_RS06595 WP_000786708.1 1345158..1346213(-) (comB6) [Helicobacter pylori F16]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNLFSASTLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSML
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCIFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTPPVSSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=46922 HPF16_RS06595 WP_000786708.1 1345158..1346213(-) (comB6) [Helicobacter pylori F16]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCACACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGTGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCATGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGATTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCATTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCACCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATTA
CGACCCCACCCGTTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96